Basic Information:

  VIRBase ID:  

VHID00479293

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          CNKSR1:  NM_001297648     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	CNKSR1
miRBase Accession/Entrez ID	MIMAT0015212	10256
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CNK//CNK1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CNKSR1	chr1:26507724(+) A-I      intronic chr1:26507707(+) A-I      intronic chr1:26507727(+) A-I      intronic chr1:26507713(+) A-I      intronic chr1:26512090(+) A-I      intronic chr1:26513239(+) A-I      intronic chr1:26512065(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CNKSR1	chr1:26504005-26504006(+) m6A 5'UTR//exon       25456834 chr1:26504043-26504044(+) m6A CDS//exon       25456834 chr1:26504053-26504054(+) m6A CDS//exon       25456834 chr1:26504059-26504060(+) m6A CDS//exon       25456834 chr1:26515800-26515801(+) m1A 3'UTR//CDS       26863196 chr1:26515945-26515946(+) m6A 3'UTR//CDS       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CNKSR1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: CNKSR1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg