Basic Information:

  VIRBase ID:  

VHID00478627

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          NAB2:  NM_001330305     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	NAB2
miRBase Accession/Entrez ID	MIMAT0015212	4665
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MADER

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NAB2	chr12:57482898-57482899(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828 chr12:57482941-57482942(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828 chr12:57482952-57482953(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr12:57482962-57482963(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr12:57483103-57483104(+) m6A CDS//exon       24284625//24209618 chr12:57483117-57483118(+) m6A CDS//exon       24284625//24209618 chr12:57483131-57483132(+) m6A CDS//exon       24284625//24209618 chr12:57485001-57485002(+) m6A CDS//intron       24284625//24209618 chr12:57485220-57485221(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57485318-57485319(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:57485351-57485352(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:57485365-57485366(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:57485481-57485482(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:57485511-57485512(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr12:57485527-57485528(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr12:57486714-57486715(+) m6A CDS//exon       - chr12:57486744-57486745(+) m6A CDS//exon       24284625 chr12:57486853-57486854(+) m6A CDS//exon       24284625 chr12:57486933-57486934(+) m6A CDS       24284625 chr12:57486967-57486968(+) m6A CDS       24284625 chr12:57487284-57487285(+) m6A CDS//intron       24284625 chr12:57488415-57488416(+) m6A CDS       24284625 chr12:57488434-57488435(+) m6A CDS       24284625 chr12:57488511-57488512(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr12:57488525-57488526(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57488532-57488533(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57488539-57488540(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57488556-57488557(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57488648-57488649(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57488692-57488693(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57488745-57488746(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57488836-57488837(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57488847-57488848(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57488864-57488865(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57488926-57488927(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57488933-57488934(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57489125-57489126(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NAB2	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: NAB2

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg