Basic Information:

  VIRBase ID:  

VHID00478329

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          CELSR2:  NM_001408     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	CELSR2
miRBase Accession/Entrez ID	MIMAT0015212	1952
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ADGRC2//CDHF10//EGFL2//Flamingo1//MEGF3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CELSR2	chr1:109799838(+) A-I      intronic chr1:109809442(+) A-I      intronic chr1:109799895(+) A-I      intronic chr1:109799914(+) A-I      intronic chr1:109795329(+) A-I      Syn:Leu->Leu chr1:109799367(+) A-I      intronic chr1:109799770(+) A-I      intronic chr1:109799287(+) A-I      intronic chr1:109799916(+) A-I      intronic chr1:109799735(+) A-I      intronic chr1:109799708(+) A-I      intronic chr1:109799798(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CELSR2	chr1:109792795-109792796(+) m6A CDS       24284625 chr1:109792891-109792892(+) m6A CDS       24284625//25456834//24981863//22575960 chr1:109793278-109793279(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:109793404-109793405(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109793451-109793452(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109793488-109793489(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109793602-109793603(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:109793751-109793752(+) m6A CDS       24284625//22608085 chr1:109793824-109793825(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:109793980-109793981(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109794035-109794036(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109794057-109794058(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109794344-109794345(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794401-109794402(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794406-109794407(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794451-109794452(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794607-109794608(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794661-109794662(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109794721-109794722(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794728-109794729(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794781-109794782(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794871-109794872(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794919-109794920(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794958-109794959(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109794988-109794989(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795021-109795022(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795030-109795031(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795066-109795067(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795153-109795154(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109795235-109795236(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109795384-109795385(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109795498-109795499(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109795615-109795616(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109795648-109795649(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795654-109795655(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795663-109795664(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795907-109795908(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109795966-109795967(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:109801146-109801147(+) m6A CDS       24284625//24981863 chr1:109801227-109801228(+) m6A CDS       24284625//25456834//24981863 chr1:109801257-109801258(+) m6A CDS       24284625//25456834//24981863 chr1:109801353-109801354(+) m6A CDS       24284625//25456834 chr1:109801458-109801459(+) m6A CDS       24284625 chr1:109801601-109801602(+) m6A CDS       24284625//24981863 chr1:109801611-109801612(+) m6A CDS       24284625 chr1:109812779-109812780(+) m6A exon//intron       24284625 chr1:109812844-109812845(+) m6A exon//intron       24981863 chr1:109815466-109815467(+) m6A CDS//exon       - chr1:109815532-109815533(+) m6A CDS//exon       24284625 chr1:109815623-109815624(+) m6A CDS//exon       24284625//24981863 chr1:109815826-109815827(+) m6A CDS//exon       24284625 chr1:109815834-109815835(+) m6A CDS//exon       24284625 chr1:109816276-109816277(+) m6A CDS//exon       25456834//24981863 chr1:109816399-109816400(+) m6A exon//intron       24284625//24209618//25456834//24981863 chr1:109816412-109816413(+) m6A exon//intron       24284625//24209618//25456834//24981863 chr1:109816447-109816448(+) m6A exon//intron       24284625//25456834//24981863 chr1:109816895-109816896(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr1:109816919-109816920(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr1:109817045-109817046(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109817110-109817111(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109817156-109817157(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109817275-109817276(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109817310-109817311(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109817325-109817326(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109817344-109817345(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109817413-109817414(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:109818035-109818036(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CELSR2	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: CELSR2

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg