Basic Information:

  VIRBase ID:  

VHID00478010

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          RGPD6:  NM_001384364     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	RGPD6
miRBase Accession/Entrez ID	MIMAT0003712	729540
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RanBP2L1//RanBP2L2//RGP6//RGPD7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RGPD6	chr2:110572683(+) A-I      intronic chr2:110572738(+) A-I      intronic chr2:110572693(+) A-I      intronic chr2:110573558(+) A-I      intronic chr2:110573370(+) A-I      intronic chr2:110556802(+) A-I      intronic chr2:111329852(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RGPD6	chr2:111271906-111271907(-) Y 3'UTR//exon       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	RGPD6	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: RGPD6

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg