Basic Information:

  VIRBase ID:  

VHID00476578

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          DDX60L:  NM_001378071     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	DDX60L
miRBase Accession/Entrez ID	MIMAT0003712	91351
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DDX60L	chr4:169307310(-) A-I      intronic chr4:169307375(-) A-I      intronic chr4:169305538(-) A-I      intronic chr4:169305576(-) A-I      intronic chr4:169350363(-) A-I      intronic chr4:169351127(-) A-I      intronic chr4:169351132(-) A-I      intronic chr4:169351123(-) A-I      intronic chr4:169305529(-) A-I      intronic chr4:169307302(-) A-I      intronic chr4:169350528(-) A-I      intronic chr4:169305555(-) A-I      intronic chr4:169279864(-) A-I      intronic chr4:169285804(-) A-I      intronic chr4:169350326(-) A-I      intronic chr4:169279889(-) A-I      intronic chr4:169385630(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DDX60L	chr4:169277954-169277955(-) m6A 3'UTR//exon       27773535 chr4:169277968-169277969(-) m6A 3'UTR//exon       27773535 chr4:169278031-169278032(-) m6A 3'UTR//exon       27773535 chr4:169278177-169278178(-) m6A 3'UTR//exon       27773535 chr4:169278199-169278200(-) m6A 3'UTR//exon       27773535 chr4:169278213-169278214(-) m6A 3'UTR//exon       27773535 chr4:169278225-169278226(-) m6A 3'UTR//exon       27773535 chr4:169278276-169278277(-) m6A 3'UTR//exon       27773535 chr4:169278424-169278425(-) m6A 3'UTR//exon       27773535 chr4:169278447-169278448(-) m6A 3'UTR//exon       27773535 chr4:169278470-169278471(-) m6A 3'UTR//exon       24981863//27773535 chr4:169278562-169278563(-) m6A 3'UTR//exon       24981863//27773535 chr4:169278590-169278591(-) m6A 3'UTR//exon       24981863//27773535//27371828 chr4:169278614-169278615(-) m6A 3'UTR//exon       24981863//27773535//27371828 chr4:169278685-169278686(-) m6A 3'UTR//exon       24981863//27773535 chr4:169278814-169278815(-) m6A 3'UTR//exon       24981863//27773535 chr4:169278828-169278829(-) m6A 3'UTR//exon       24981863//27773535 chr4:169278847-169278848(-) m6A 3'UTR//exon       24981863//27773535 chr4:169278871-169278872(-) m6A 3'UTR//exon       24981863//27773535 chr4:169278888-169278889(-) m6A 3'UTR//exon       24981863//27773535 chr4:169279094-169279095(-) m6A 3'UTR//exon       24981863//27773535 chr4:169279178-169279179(-) m6A 3'UTR//exon       24981863 chr4:169279188-169279189(-) m6A 3'UTR//exon       24981863 chr4:169315717-169315718(-) m6A CDS       24981863//27773535 chr4:169315729-169315730(-) m6A CDS       24981863//27773535 chr4:169348408-169348409(-) m6A CDS       24981863 chr4:169410254-169410255(-) m6A exon//intron       27773535 chr4:169410321-169410322(-) m6A exon//intron       27773535 chr4:169410364-169410365(-) m6A exon//intron       27773535 chr4:169410385-169410386(-) m6A exon//intron       27773535 chr4:169451783-169451784(-) m6A exon//intron       27773535 chr4:169451793-169451794(-) m6A exon//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	DDX60L	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: DDX60L

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg