Basic Information:

  VIRBase ID:  

VHID00476123

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          RNF39:  NM_170769     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	RNF39
miRBase Accession/Entrez ID	MIMAT0003712	80352
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAP216//HZF//HZFW//LIRF

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RNF39	chr6:30038336-30038337(-) m6A 3'UTR       27773535 chr6:30038698-30038699(-) m6A 3'UTR       27773535 chr6:30038737-30038738(-) m6A 3'UTR       27773535 chr6:30039041-30039042(-) m6A CDS//intron       25456834 chr6:30039047-30039048(-) m6A CDS//intron       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	RNF39	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: RNF39

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg