Detail Information

Basic Information:


  VIRBase ID:  

VHID00475832

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:           KRI1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-5p KRI1
miRBase
Accession/Entrez ID		 MIMAT0003712 65095
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KRI1
chr19:10673794(-) A-I      intronic
chr19:10673837(-) A-I      intronic
chr19:10673835(-) A-I      intronic
chr19:10675172(-) A-I      intronic
chr19:10674250(-) A-I      intronic
chr19:10675164(-) A-I      intronic
chr19:10675258(-) A-I      intronic
chr19:10675241(-) A-I      intronic
chr19:10675167(-) A-I      intronic
chr19:10675135(-) A-I      intronic
chr19:10675134(-) A-I      intronic
chr19:10675079(-) A-I      intronic
chr19:10675060(-) A-I      intronic
chr19:10675053(-) A-I      intronic
chr19:10674932(-) A-I      intronic
chr19:10674926(-) A-I      intronic
chr19:10674894(-) A-I      intronic
chr19:10673817(-) A-I      intronic
chr19:10668037(-) A-I      intronic
chr19:10668028(-) A-I      intronic
chr19:10667976(-) A-I      intronic
chr19:10667929(-) A-I      intronic
chr19:10667892(-) A-I      intronic
chr19:10674227(-) A-I      intronic
chr19:10667159(-) A-I      intronic
chr19:10667109(-) A-I      intronic
chr19:10674795(-) A-I      intronic
chr19:10674603(-) A-I      intronic
chr19:10674599(-) A-I      intronic
chr19:10674260(-) A-I      intronic
chr19:10667231(-) A-I      intronic
chr19:10674698(-) A-I      intronic
chr19:10674479(-) A-I      intronic
chr19:10675248(-) A-I      intronic
chr19:10675014(-) A-I      intronic
chr19:10674663(-) A-I      intronic
chr19:10667280(-) A-I      intronic
chr19:10675240(-) A-I      intronic
chr19:10674068(-) A-I      intronic
chr19:10666860(-) A-I      intronic
chr19:10674453(-) A-I      intronic
chr19:10674295(-) A-I      intronic
chr19:10674095(-) A-I      intronic
chr19:10674971(-) A-I      intronic
chr19:10674778(-) A-I      intronic
chr19:10667488(-) A-I      intronic
chr19:10674226(-) A-I      intronic
chr19:10675008(-) A-I      intronic
chr19:10673876(-) A-I      intronic
chr19:10674477(-) A-I      intronic
chr19:10675195(-) A-I      intronic
chr19:10666841(-) A-I      intronic
chr19:10674364(-) A-I      intronic
chr19:10673914(-) A-I      intronic
chr19:10674436(-) A-I      intronic
chr19:10664390(-) A-I      3'UTR
chr19:10664432(-) A-I      3'UTR
chr19:10674657(-) A-I      intronic
chr19:10674974(-) A-I      intronic
chr19:10674569(-) A-I      intronic
chr19:10674893(-) A-I      intronic
chr19:10667259(-) A-I      intronic
chr19:10675073(-) A-I      intronic
chr19:10664376(-) A-I      3'UTR
chr19:10674700(-) A-I      intronic
chr19:10673764(-) A-I      intronic
chr19:10674880(-) A-I      intronic
chr19:10668072(-) A-I      intronic
chr19:10666782(-) A-I      intronic
chr19:10667896(-) A-I      intronic
chr19:10675049(-) A-I      intronic
chr19:10673920(-) A-I      intronic
chr19:10674892(-) A-I      intronic
chr19:10674118(-) A-I      intronic
chr19:10674495(-) A-I      intronic
chr19:10674367(-) A-I      intronic
chr19:10673870(-) A-I      intronic
chr19:10674363(-) A-I      intronic
chr19:10674119(-) A-I      intronic
chr19:10666864(-) A-I      intronic
chr19:10666948(-) A-I      intronic
chr19:10675235(-) A-I      intronic
chr19:10673234(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KRI1
chr19:10664250(-) T-A exon 3'UTR    22484847
chr19:10664251(-) T-A exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KRI1
chr19:10663875-10663876(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr19:10663923-10663924(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr19:10664006-10664007(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr19:10664034-10664035(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr19:10664136-10664137(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:10664147-10664148(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:10664178-10664179(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:10664194-10664195(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:10664243-10664244(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr19:10664278-10664279(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr19:10664425-10664426(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr19:10664448-10664449(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr19:10664572-10664573(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:10664636-10664637(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:10664653-10664654(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:10664719-10664720(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:10664949-10664950(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828//27773536//22575960
chr19:10665807-10665808(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828//27773536//22575960
chr19:10665837-10665838(-) m6A CDS//exon//intron       24981863//27773535//27371828//27773536//22575960
chr19:10665973-10665974(-) m6A CDS//exon//intron       27773535//22575960
chr19:10665996-10665997(-) m6A CDS//exon//intron       27773535//22575960
chr19:10668303-10668304(-) m6A CDS//exon//intron       24284625//27371828
chr19:10668312-10668313(-) m6A CDS//exon//intron       24284625//27371828//27773536
chr19:10668354-10668355(-) m6A CDS//exon//intron       24284625//27371828//27773536
chr19:10668448-10668449(-) m6A CDS//exon//intron       24284625//24209618//27371828//27773536
chr19:10668501-10668502(-) m1A CDS//exon//intron       26863196
chr19:10668660-10668661(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr19:10668690-10668691(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10668720-10668721(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10668726-10668727(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10668789-10668790(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10668795-10668796(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10668802-10668803(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10668853-10668854(-) m1A CDS//exon//intron       26863196
chr19:10670080-10670081(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22575960
chr19:10670164-10670165(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr19:10670260-10670261(-) m6A exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:10670308-10670309(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:10670377-10670378(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828//27773536//22575960//22608085
chr19:10670432-10670433(-) m6A exon//intron       24284625//24981863//27773535//27371828//27773536//22575960
chr19:10670461-10670462(-) m6A exon//intron       24284625//27773535//27371828//27773536//22575960
chr19:10670495-10670496(-) m6A CDS//exon//intron       24284625//25456834//27773535//27371828//27773536
chr19:10670527-10670528(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10670534-10670535(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10670542-10670543(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr19:10671681-10671682(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22575960
chr19:10671700-10671701(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22575960
chr19:10671717-10671718(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22575960
chr19:10671858-10671859(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22575960
chr19:10671920-10671921(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22575960
chr19:10672356-10672357(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828
chr19:10672362-10672363(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828
chr19:10672388-10672389(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828
chr19:10672411-10672412(-) m6A exon//intron       24284625//24209618//24981863//27773535//27371828
chr19:10672472-10672473(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828
chr19:10672486-10672487(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828
chr19:10672500-10672501(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828
chr19:10673437-10673438(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960
chr19:10673488-10673489(-) m6A 5'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960
chr19:10673500-10673501(-) m6A 5'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960
chr19:10675607-10675608(-) m6A 5'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960
chr19:10675648-10675649(-) m6A 5'UTR//CDS//exon//intron       24284625//24209618//27773535//27371828//27773536//22575960
chr19:10675655-10675656(-) m1A 5'UTR//CDS//exon//intron       26863196
chr19:10675684-10675685(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536
chr19:10676136-10676137(-) m6A exon//intron       27773535
chr19:10676309-10676310(-) m6A exon//intron       27773536
chr19:10676411-10676412(-) m6A CDS//exon//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr19:10676441-10676442(-) m6A CDS//exon//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr19:10676447-10676448(-) m6A CDS//exon//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr19:10676591-10676592(-) m6A 5'UTR//CDS//exon       25456834//24981863//27371828//27773536//22575960//22608085
chr19:10676666-10676667(-) m6A 5'UTR//CDS//exon       25456834//24981863//27371828//27773536//22608085
chr19:10676680-10676681(-) m6A 5'UTR//CDS//exon       25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-5p
Exosome Primary dendritic cells     21505438
KRI1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-5p
Interactor2: KRI1

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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