Detail Information

Basic Information:


  VIRBase ID:  

VHID00475307

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:           MINDY1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-5p MINDY1
miRBase
Accession/Entrez ID		 MIMAT0003712 55793
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - FAM63A//MINDY-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MINDY1
chr1:150977082(-) A-I      intronic
chr1:150976568(-) A-I      intronic
chr1:150976672(-) A-I      intronic
chr1:150976666(-) A-I      intronic
chr1:150976531(-) A-I      intronic
chr1:150977043(-) A-I      intronic
chr1:150969284(-) A-I      3'UTR
chr1:150969238(-) A-I      3'UTR
chr1:150969222(-) A-I      3'UTR
chr1:150976545(-) A-I      intronic
chr1:150977145(-) A-I      intronic
chr1:150969215(-) A-I      3'UTR
chr1:150969196(-) A-I      3'UTR
chr1:150969186(-) A-I      3'UTR
chr1:150977144(-) A-I      intronic
chr1:150969172(-) A-I      3'UTR
chr1:150977124(-) A-I      intronic
chr1:150976577(-) A-I      intronic
chr1:150976575(-) A-I      intronic
chr1:150977066(-) A-I      intronic
chr1:150969195(-) A-I      3'UTR
chr1:150976495(-) A-I      intronic
chr1:150969213(-) A-I      3'UTR
chr1:150976488(-) A-I      intronic
chr1:150969223(-) A-I      3'UTR
chr1:150969244(-) A-I      3'UTR
chr1:150969247(-) A-I      3'UTR
chr1:150969271(-) A-I      3'UTR
chr1:150969079(-) A-I      3'UTR
chr1:150976566(-) A-I      intronic
chr1:150969283(-) A-I      3'UTR
chr1:150969287(-) A-I      3'UTR
chr1:150969292(-) A-I      3'UTR
chr1:150977163(-) A-I      intronic
chr1:150976602(-) A-I      intronic
chr1:150976617(-) A-I      intronic
chr1:150976510(-) A-I      intronic
chr1:150976504(-) A-I      intronic
chr1:150976623(-) A-I      intronic
chr1:150969220(-) A-I      3'UTR
chr1:150976154(-) A-I      intronic
chr1:150976501(-) A-I      intronic
chr1:150977014(-) A-I      intronic
chr1:150969084(-) A-I      3'UTR
chr1:150969124(-) A-I      3'UTR
chr1:150977185(-) A-I      intronic
chr1:150976563(-) A-I      intronic
chr1:150969134(-) A-I      3'UTR
chr1:150976587(-) A-I      intronic
chr1:150977034(-) A-I      intronic
chr1:150977038(-) A-I      intronic
chr1:150969140(-) A-I      3'UTR
chr1:150976178(-) A-I      intronic
chr1:150977042(-) A-I      intronic
chr1:150976496(-) A-I      intronic
chr1:150969151(-) A-I      3'UTR
chr1:150976984(-) A-I      intronic
chr1:150976536(-) A-I      intronic
chr1:150977130(-) A-I      intronic
chr1:150976159(-) A-I      intronic
chr1:150976615(-) A-I      intronic
chr1:150969199(-) A-I      3'UTR
chr1:150969086(-) A-I      3'UTR
chr1:150977106(-) A-I      intronic
chr1:150969221(-) A-I      3'UTR
chr1:150969032(-) A-I      3'UTR
chr1:150969156(-) A-I      3'UTR
chr1:150969286(-) A-I      3'UTR
chr1:150976491(-) A-I      intronic
chr1:150976985(-) A-I      intronic
chr1:150969257(-) A-I      3'UTR
chr1:150969278(-) A-I      3'UTR
chr1:150969147(-) A-I      3'UTR
chr1:150976537(-) A-I      intronic
chr1:150969311(-) A-I      3'UTR
chr1:150969183(-) A-I      3'UTR
chr1:150969157(-) A-I      3'UTR
chr1:150976947(-) A-I      intronic
chr1:150969130(-) A-I      3'UTR
chr1:150977084(-) A-I      intronic
chr1:150976527(-) A-I      intronic
chr1:150976441(-) A-I      intronic
chr1:150969197(-) A-I      3'UTR
chr1:150977018(-) A-I      intronic
chr1:150969033(-) A-I      3'UTR
chr1:150969031(-) A-I      3'UTR
chr1:150969270(-) A-I      3'UTR
chr1:150969091(-) A-I      3'UTR
chr1:150976636(-) A-I      intronic
chr1:150969233(-) A-I      3'UTR
chr1:150976581(-) A-I      intronic
chr1:150977120(-) A-I      intronic
chr1:150977094(-) A-I      intronic
chr1:150969252(-) A-I      3'UTR
chr1:150977111(-) A-I      intronic
chr1:150977123(-) A-I      intronic
chr1:150976961(-) A-I      intronic
chr1:150976866(-) A-I      intronic
chr1:150976631(-) A-I      intronic
chr1:150977155(-) A-I      intronic
chr1:150976618(-) A-I      intronic
chr1:150969260(-) A-I      3'UTR
chr1:150969202(-) A-I      3'UTR
chr1:150976649(-) A-I      intronic
chr1:150976578(-) A-I      intronic
chr1:150977119(-) A-I      intronic
chr1:150976428(-) A-I      intronic
chr1:150977674(-) A-I      intronic
chr1:150976988(-) A-I      intronic
chr1:150976690(-) A-I      intronic
chr1:150969193(-) A-I      3'UTR
chr1:150969214(-) A-I      3'UTR
chr1:150976671(-) A-I      intronic
chr1:150976971(-) A-I      intronic
chr1:150969293(-) A-I      3'UTR
chr1:150969121(-) A-I      3'UTR
chr1:150976650(-) A-I      intronic
chr1:150977672(-) A-I      intronic
chr1:150969198(-) A-I      3'UTR
chr1:150969101(-) A-I      3'UTR

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-5p
Exosome Primary dendritic cells     21505438
MINDY1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-5p
Interactor2: MINDY1

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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