Basic Information:

  VIRBase ID:  

VHID00474500

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          TSKU:  NM_001258210     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	TSKU
miRBase Accession/Entrez ID	MIMAT0003712	25987
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	E2IG4//LRRC54//TSK

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TSKU	chr11:76507311(+) A-I      Syn:Leu->Leu

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TSKU	chr11:76507311(+) A-I exon CDS    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TSKU	chr11:76494344-76494345(+) m6A 5'UTR//intron       24981863 chr11:76495193-76495194(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr11:76495261-76495262(+) m6A 5'UTR//intron       24284625//25456834 chr11:76495337-76495338(+) m6A 5'UTR//intron       25456834 chr11:76495354-76495355(+) m6A 5'UTR//intron       25456834 chr11:76503013-76503014(+) m6A 5'UTR//intron       24284625 chr11:76503069-76503070(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr11:76503146-76503147(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr11:76503155-76503156(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr11:76503192-76503193(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr11:76503220-76503221(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr11:76503256-76503257(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr11:76503308-76503309(+) m6A 5'UTR//intron       24284625//24981863 chr11:76503397-76503398(+) m6A 5'UTR//intron       24981863//22608085 chr11:76503413-76503414(+) m6A 5'UTR//intron       24981863//22608085 chr11:76503420-76503421(+) m6A 5'UTR//intron       24981863//22608085 chr11:76503427-76503428(+) m6A 5'UTR//intron       24981863//22608085 chr11:76503457-76503458(+) m6A 5'UTR//intron       24981863//22608085 chr11:76503467-76503468(+) m6A 5'UTR//intron       24981863//22608085 chr11:76503504-76503505(+) m6A 5'UTR//intron       24981863 chr11:76503790-76503791(+) m6A 5'UTR//intron       24284625 chr11:76506705-76506706(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr11:76506747-76506748(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76506835-76506836(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76506850-76506851(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507069-76507070(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507147-76507148(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507228-76507229(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507240-76507241(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507270-76507271(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507303-76507304(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507438-76507439(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507513-76507514(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507681-76507682(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507752-76507753(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507876-76507877(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507934-76507935(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507949-76507950(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507962-76507963(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76507967-76507968(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr11:76508065-76508066(+) m6A 3'UTR       24284625 chr11:76508218-76508219(+) m6A 3'UTR       26404942 chr11:76508281-76508282(+) m6A 3'UTR       24284625//24981863//26404942 chr11:76508368-76508369(+) m6A 3'UTR       24284625//24981863//26404942 chr11:76508474-76508475(+) m6A 3'UTR       24284625//24981863//26404942 chr11:76508498-76508499(+) m6A 3'UTR       24284625//26404942 chr11:76508629-76508630(+) m6A 3'UTR       24284625 chr11:76508636-76508637(+) m6A 3'UTR       24284625 chr11:76508801-76508802(+) m6A 3'UTR       24284625 chr11:76509173-76509174(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	TSKU	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: TSKU

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg