Detail Information

Basic Information:


  VIRBase ID:  

VHID00474352

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:           NPTXR:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-5p NPTXR
miRBase
Accession/Entrez ID		 MIMAT0003712 23467
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - NPR

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NPTXR
chr22:39217126(-) A-I      3'UTR
chr22:39217117(-) A-I      3'UTR
chr22:39234783(-) A-I      intronic
chr22:39234781(-) A-I      intronic
chr22:39234770(-) A-I      intronic
chr22:39223377(-) A-I      intronic
chr22:39223267(-) A-I      intronic
chr22:39217166(-) A-I      3'UTR
chr22:39216976(-) A-I      3'UTR
chr22:39217032(-) A-I      3'UTR
chr22:39223511(-) A-I      intronic
chr22:39235488(-) A-I      intronic
chr22:39217172(-) A-I      3'UTR
chr22:39217028(-) A-I      3'UTR
chr22:39217171(-) A-I      3'UTR
chr22:39217076(-) A-I      3'UTR
chr22:39217038(-) A-I      3'UTR
chr22:39216992(-) A-I      3'UTR
chr22:39217190(-) A-I      3'UTR
chr22:39220216(-) A-I      intronic
chr22:39234725(-) A-I      intronic
chr22:39235393(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NPTXR
chr22:39233024(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NPTXR
chr22:39214764-39214765(-) m6A 3'UTR       24284625
chr22:39214807-39214808(-) m6A 3'UTR       24284625
chr22:39214838-39214839(-) m6A 3'UTR       24284625
chr22:39216926-39216927(-) m6A 3'UTR       24981863
chr22:39216995-39216996(-) m6A 3'UTR       24981863
chr22:39218394-39218395(-) m6A 3'UTR       24284625//24209618//24981863
chr22:39218567-39218568(-) m6A 3'UTR       24284625//24981863//27371828
chr22:39224434-39224435(-) m6A CDS       27371828//27773536
chr22:39224494-39224495(-) m6A CDS       27773536
chr22:39239258-39239259(-) m6A CDS       27773536
chr22:39239309-39239310(-) m6A CDS       27773536
chr22:39239417-39239418(-) m6A CDS       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-5p
Exosome Primary dendritic cells     21505438
NPTXR
Exosome Blood     -
Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-5p
Interactor2: NPTXR

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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