Basic Information:

  VIRBase ID:  

VHID00473717

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          CHAF1A:  NM_005483     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	CHAF1A
miRBase Accession/Entrez ID	MIMAT0003712	10036
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CAF-1//CAF1//CAF1B//CAF1P150//P150

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CHAF1A	chr19:4435643(+) A-I      intronic chr19:4435647(+) A-I      intronic chr19:4410544(+) A-I      intronic chr19:4410527(+) A-I      intronic chr19:4427458(+) A-I      intronic chr19:4411745(+) A-I      intronic chr19:4410457(+) A-I      intronic chr19:4405530(+) A-I      intronic chr19:4410563(+) A-I      intronic chr19:4410552(+) A-I      intronic chr19:4422111(+) A-I      intronic chr19:4422136(+) A-I      intronic chr19:4433661(+) A-I      intronic chr19:4410567(+) A-I      intronic chr19:4434187(+) A-I      intronic chr19:4416782(+) A-I      intronic chr19:4417157(+) A-I      intronic chr19:4408733(+) A-I      intronic chr19:4408654(+) A-I      intronic chr19:4408588(+) A-I      intronic chr19:4408396(+) A-I      intronic chr19:4408371(+) A-I      intronic chr19:4408104(+) A-I      intronic chr19:4407870(+) A-I      intronic chr19:4407851(+) A-I      intronic chr19:4410293(+) A-I      intronic chr19:4435388(+) A-I      intronic chr19:4435475(+) A-I      intronic chr19:4407811(+) A-I      intronic chr19:4407808(+) A-I      intronic chr19:4407744(+) A-I      intronic chr19:4407202(+) A-I      intronic chr19:4407197(+) A-I      intronic chr19:4407077(+) A-I      intronic chr19:4407043(+) A-I      intronic chr19:4407033(+) A-I      intronic chr19:4406964(+) A-I      intronic chr19:4406785(+) A-I      intronic chr19:4406512(+) A-I      intronic chr19:4406463(+) A-I      intronic chr19:4403934(+) A-I      intronic chr19:4403917(+) A-I      intronic chr19:4417170(+) A-I      intronic chr19:4417476(+) A-I      intronic chr19:4417511(+) A-I      intronic chr19:4417599(+) A-I      intronic chr19:4417692(+) A-I      intronic chr19:4420855(+) A-I      intronic chr19:4421268(+) A-I      intronic chr19:4421291(+) A-I      intronic chr19:4421305(+) A-I      intronic chr19:4421603(+) A-I      intronic chr19:4421609(+) A-I      intronic chr19:4421914(+) A-I      intronic chr19:4421938(+) A-I      intronic chr19:4422106(+) A-I      intronic chr19:4422272(+) A-I      intronic chr19:4426282(+) A-I      intronic chr19:4417667(+) A-I      intronic chr19:4435605(+) A-I      intronic chr19:4426969(+) A-I      intronic chr19:4441351(+) A-I      intronic chr19:4441389(+) A-I      intronic chr19:4441390(+) A-I      intronic chr19:4441395(+) A-I      intronic chr19:4410356(+) A-I      intronic chr19:4410363(+) A-I      intronic chr19:4438434(+) A-I      intronic chr19:4411280(+) A-I      intronic chr19:4441692(+) A-I      intronic chr19:4412390(+) A-I      intronic chr19:4438858(+) A-I      intronic chr19:4439135(+) A-I      intronic chr19:4439257(+) A-I      intronic chr19:4412450(+) A-I      intronic chr19:4413249(+) A-I      intronic chr19:4432524(+) A-I      intronic chr19:4427724(+) A-I      intronic chr19:4426696(+) A-I      intronic chr19:4435337(+) A-I      intronic chr19:4434263(+) A-I      intronic chr19:4434245(+) A-I      intronic chr19:4413266(+) A-I      intronic chr19:4413329(+) A-I      intronic chr19:4439811(+) A-I      intronic chr19:4416745(+) A-I      intronic chr19:4426304(+) A-I      intronic chr19:4441082(+) A-I      intronic chr19:4435488(+) A-I      intronic chr19:4441086(+) A-I      intronic chr19:4435985(+) A-I      intronic chr19:4435989(+) A-I      intronic chr19:4427286(+) A-I      intronic chr19:4435997(+) A-I      intronic chr19:4436005(+) A-I      intronic chr19:4436057(+) A-I      intronic chr19:4435935(+) A-I      intronic chr19:4436061(+) A-I      intronic chr19:4426651(+) A-I      intronic chr19:4437806(+) A-I      intronic chr19:4432579(+) A-I      intronic chr19:4432587(+) A-I      intronic chr19:4432598(+) A-I      intronic chr19:4433637(+) A-I      intronic chr19:4433653(+) A-I      intronic chr19:4433740(+) A-I      intronic chr19:4433796(+) A-I      intronic chr19:4441194(+) A-I      intronic chr19:4441183(+) A-I      intronic chr19:4433858(+) A-I      intronic chr19:4437862(+) A-I      intronic chr19:4436093(+) A-I      intronic chr19:4407825(+) A-I      intronic chr19:4439157(+) A-I      intronic chr19:4441745(+) A-I      intronic chr19:4435500(+) A-I      intronic chr19:4420950(+) A-I      intronic chr19:4421198(+) A-I      intronic chr19:4420845(+) A-I      intronic chr19:4407199(+) A-I      intronic chr19:4411830(+) A-I      intronic chr19:4421210(+) A-I      intronic chr19:4413172(+) A-I      intronic chr19:4407689(+) A-I      intronic chr19:4414313(+) A-I      intronic chr19:4435880(+) A-I      intronic chr19:4434203(+) A-I      intronic chr19:4420798(+) A-I      intronic chr19:4417734(+) A-I      intronic chr19:4416664(+) A-I      intronic chr19:4420888(+) A-I      intronic chr19:4421559(+) A-I      intronic chr19:4426396(+) A-I      intronic chr19:4439243(+) A-I      intronic chr19:4406801(+) A-I      intronic chr19:4434165(+) A-I      intronic chr19:4419662(+) A-I      intronic chr19:4439022(+) A-I      intronic chr19:4427071(+) A-I      intronic chr19:4441485(+) A-I      intronic chr19:4410299(+) A-I      intronic chr19:4433617(+) A-I      intronic chr19:4408108(+) A-I      intronic chr19:4420867(+) A-I      intronic chr19:4421595(+) A-I      intronic chr19:4420814(+) A-I      intronic chr19:4416768(+) A-I      intronic chr19:4421675(+) A-I      intronic chr19:4440363(+) A-I      intronic chr19:4414143(+) A-I      intronic chr19:4433698(+) A-I      intronic chr19:4410763(+) A-I      intronic chr19:4416820(+) A-I      intronic chr19:4421323(+) A-I      intronic chr19:4414198(+) A-I      intronic chr19:4421540(+) A-I      intronic chr19:4421059(+) A-I      intronic chr19:4426810(+) A-I      intronic chr19:4416672(+) A-I      intronic chr19:4411827(+) A-I      intronic chr19:4410745(+) A-I      intronic chr19:4407089(+) A-I      intronic chr19:4420768(+) A-I      intronic chr19:4434124(+) A-I      intronic chr19:4411908(+) A-I      intronic chr19:4408143(+) A-I      intronic chr19:4439138(+) A-I      intronic chr19:4439078(+) A-I      intronic chr19:4422107(+) A-I      intronic chr19:4440965(+) A-I      intronic chr19:4406985(+) A-I      intronic chr19:4435514(+) A-I      intronic chr19:4434268(+) A-I      intronic chr19:4407886(+) A-I      intronic chr19:4407866(+) A-I      intronic chr19:4435606(+) A-I      intronic chr19:4413341(+) A-I      intronic chr19:4435401(+) A-I      intronic chr19:4411774(+) A-I      intronic chr19:4408103(+) A-I      intronic chr19:4441484(+) A-I      intronic chr19:4421978(+) A-I      intronic chr19:4408583(+) A-I      intronic chr19:4435641(+) A-I      intronic chr19:4435553(+) A-I      intronic chr19:4426541(+) A-I      intronic chr19:4410495(+) A-I      intronic chr19:4421548(+) A-I      intronic chr19:4410773(+) A-I      intronic chr19:4411880(+) A-I      intronic chr19:4440914(+) A-I      intronic chr19:4420765(+) A-I      intronic chr19:4437386(+) A-I      intronic chr19:4411738(+) A-I      intronic chr19:4420474(+) A-I      intronic chr19:4418674(+) A-I      intronic chr19:4426745(+) A-I      intronic chr19:4421545(+) A-I      intronic chr19:4405494(+) A-I      intronic chr19:4438435(+) A-I      intronic chr19:4441508(+) A-I      intronic chr19:4435550(+) A-I      intronic chr19:4439301(+) A-I      intronic chr19:4421666(+) A-I      intronic chr19:4441701(+) A-I      intronic chr19:4411762(+) A-I      intronic chr19:4422220(+) A-I      intronic chr19:4441263(+) A-I      intronic chr19:4406981(+) A-I      intronic chr19:4406847(+) A-I      intronic chr19:4416880(+) A-I      intronic chr19:4407123(+) A-I      intronic chr19:4426958(+) A-I      intronic chr19:4421306(+) A-I      intronic chr19:4412402(+) A-I      intronic chr19:4438431(+) A-I      intronic chr19:4421623(+) A-I      intronic chr19:4408669(+) A-I      intronic chr19:4417558(+) A-I      intronic chr19:4417732(+) A-I      intronic chr19:4406549(+) A-I      intronic chr19:4433728(+) A-I      intronic chr19:4408656(+) A-I      intronic chr19:4439036(+) A-I      intronic chr19:4420667(+) A-I      intronic chr19:4421636(+) A-I      intronic chr19:4439228(+) A-I      intronic chr19:4439124(+) A-I      intronic chr19:4408564(+) A-I      intronic chr19:4417230(+) A-I      intronic chr19:4418959(+) A-I      intronic chr19:4406957(+) A-I      intronic chr19:4408600(+) A-I      intronic chr19:4417102(+) A-I      intronic chr19:4435336(+) A-I      intronic chr19:4437876(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CHAF1A	chr19:4434222(+) A-I intron -    22327324 chr19:4421280(+) A-G intron -    22484847 chr19:4421323(+) A-G intron -    22484847 chr19:4433716(+) A-G intron -    22484847 chr19:4433859(+) A-G intron -    22484847 chr19:4434203(+) A-G intron -    22484847 chr19:4434222(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHAF1A	chr19:4405927-4405928(+) m6A CDS//exon//intron       24284625//24209618//24981863 chr19:4409013-4409014(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409025-4409026(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409052-4409053(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409059-4409060(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409065-4409066(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409117-4409118(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409160-4409161(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409178-4409179(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409190-4409191(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409200-4409201(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:4409253-4409254(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr19:4409318-4409319(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr19:4409328-4409329(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr19:4409342-4409343(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr19:4409463-4409464(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4409526-4409527(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4409542-4409543(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4409586-4409587(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4409628-4409629(+) m1A CDS       26863196 chr19:4409631-4409632(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4418053-4418054(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085 chr19:4418063-4418064(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085 chr19:4418071-4418072(+) Gm CDS//intron       - chr19:4422664-4422665(+) m1A CDS//intron       26863196 chr19:4422777-4422778(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:4423337-4423338(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:4423363-4423364(+) m1A 3'UTR//CDS       26863196 chr19:4423384-4423385(+) m1A 3'UTR//CDS       26863196 chr19:4423846-4423847(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr19:4423853-4423854(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr19:4428735-4428736(+) m6A 3'UTR//CDS       24284625 chr19:4428751-4428752(+) m6A 3'UTR//CDS       24284625 chr19:4428769-4428770(+) m6A 3'UTR//CDS       24284625 chr19:4428814-4428815(+) m6A 3'UTR//CDS       24284625 chr19:4428845-4428846(+) m6A 3'UTR//CDS       24284625 chr19:4429523-4429524(+) m6A CDS       24284625//24209618//22575960 chr19:4429583-4429584(+) m6A CDS       24284625//24209618//24981863//22575960 chr19:4429598-4429599(+) m6A CDS       24284625//24209618//24981863//22575960 chr19:4429714-4429715(+) m6A CDS       24284625//24209618//24981863//22575960 chr19:4429726-4429727(+) m6A CDS       24284625//24209618//24981863//22575960 chr19:4429747-4429748(+) m1A CDS       26863196 chr19:4431078-4431079(+) m6A exon//intron       24284625//24209618//24981863//27773535//22575960 chr19:4431967-4431968(+) m6A CDS//exon       24284625//24209618//24981863 chr19:4431986-4431987(+) m6A CDS//exon       24284625//24209618//24981863 chr19:4432084-4432085(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr19:4432140-4432141(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr19:4433154-4433155(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4433276-4433277(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4433417-4433418(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:4442254-4442255(+) m6A CDS       24284625//24209618//24981863//22575960 chr19:4442275-4442276(+) m6A CDS       24284625//24209618//24981863//22575960 chr19:4442975-4442976(+) m6A CDS//intron       24284625//24209618 chr19:4443081-4443082(+) m6A 3'UTR//intron       24284625//24209618 chr19:4443126-4443127(+) m6A 3'UTR//intron       24284625 chr19:4444829-4444830(+) m6A 3'UTR       25456834 chr19:4444886-4444887(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	CHAF1A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: CHAF1A

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg