Detail Information

Basic Information:


  VIRBase ID:  

VHID00473532

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:           NR1D1:      

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Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-5p NR1D1
miRBase
Accession/Entrez ID		 MIMAT0003712 9572
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - ear-1//EAR1//hRev//REVERBA//REVERBalpha//THRA1//THRAL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NR1D1
chr17:38249539(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NR1D1
chr17:38249125-38249126(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr17:38249148-38249149(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr17:38249245-38249246(-) m6A 3'UTR       24284625//24981863//27773535
chr17:38249289-38249290(-) m6A 3'UTR       24284625//27773535
chr17:38249399-38249400(-) m6A CDS       24284625
chr17:38249436-38249437(-) m6A CDS       24284625
chr17:38249450-38249451(-) m6A CDS       24284625
chr17:38252229-38252230(-) m6A CDS       27773535
chr17:38252270-38252271(-) m6A CDS       27773535
chr17:38253499-38253500(-) m6A CDS       27773535
chr17:38256333-38256334(-) m6A CDS       27773535
chr17:38256348-38256349(-) m6A 5'UTR       27773535
chr17:38256495-38256496(-) m6A 5'UTR       27773535
chr17:38256551-38256552(-) m6A 5'UTR       24284625//27773535//22575960
chr17:38256608-38256609(-) m6A 5'UTR       24284625//24981863//27773535
chr17:38256639-38256640(-) m6A 5'UTR       24284625//24981863//27773535
chr17:38256720-38256721(-) m6A 5'UTR       24284625//24209618//24981863//27773535//22575960
chr17:38256916-38256917(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-5p
Exosome Primary dendritic cells     21505438
NR1D1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-5p
Interactor2: NR1D1

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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