Basic Information:

  VIRBase ID:  

VHID00473277

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          TNFRSF25:  NM_148966     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	TNFRSF25
miRBase Accession/Entrez ID	MIMAT0003712	8718
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	APO-3//DDR3//DR3//GEF720//LARD//PLEKHG5//TNFRSF12//TR3//TRAMP//WSL-1//WSL-LR

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TNFRSF25	chr1:6523664(-) A-I      ncRNA chr1:6524063(-) A-I      intronic chr1:6524101(-) A-I      intronic chr1:6523726(-) A-I      intronic chr1:6523703(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TNFRSF25	chr1:6521417-6521418(-) m6A 3'UTR//exon       24981863//26404942 chr1:6521524-6521525(-) m6A 3'UTR//CDS//exon       25456834 chr1:6521629-6521630(-) m6A 3'UTR//CDS//exon       27773536 chr1:6522211-6522212(-) m6A 3'UTR//CDS//exon       27371828 chr1:6522412-6522413(-) m6A exon//intron       27371828 chr1:6522439-6522440(-) m6A exon//intron       27371828 chr1:6526223-6526224(-) m6A 5'UTR       27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	TNFRSF25	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: TNFRSF25

Evidence Support:

Prediction-Evidence	PITA//RNAHybrid
Support Database	VmiReg