Detail Information

Basic Information:


  VIRBase ID:  

VHID00472651

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:           RORC:      

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Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-5p RORC
miRBase
Accession/Entrez ID		 MIMAT0003712 6097
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - IMD42//NR1F3//RORG//RZR-GAMMA//RZRG//TOR

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RORC
chr1:151801372(-) A-I      intronic
chr1:151801379(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RORC
chr1:151779117-151779118(-) m6A 3'UTR       24284625//22575960
chr1:151779125-151779126(-) m6A 3'UTR       24284625//22575960
chr1:151779153-151779154(-) m6A 3'UTR       24284625//22575960
chr1:151779163-151779164(-) m6A 3'UTR       24284625//22575960
chr1:151779186-151779187(-) m6A 3'UTR       24284625//22575960
chr1:151779217-151779218(-) m6A 3'UTR       24284625//22575960
chr1:151779243-151779244(-) m6A 3'UTR       24284625//22575960
chr1:151779249-151779250(-) m6A 3'UTR       24284625//22575960
chr1:151779262-151779263(-) m6A 3'UTR       24284625//22575960
chr1:151779295-151779296(-) m6A 3'UTR       24284625//22575960
chr1:151779461-151779462(-) m6A 3'UTR//exon       24284625
chr1:151779484-151779485(-) m6A 3'UTR//exon       24284625
chr1:151779633-151779634(-) m6A 3'UTR//exon       27371828
chr1:151779639-151779640(-) m6A 3'UTR//exon       27371828
chr1:151779650-151779651(-) m6A 3'UTR//exon       27371828
chr1:151779742-151779743(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr1:151779770-151779771(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr1:151779856-151779857(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr1:151779892-151779893(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr1:151779934-151779935(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr1:151779976-151779977(-) m6A CDS//exon       24284625//25456834//27371828
chr1:151787494-151787495(-) m6A CDS       24284625
chr1:151787509-151787510(-) m6A CDS       24284625
chr1:151789195-151789196(-) m6A CDS       24284625
chr1:151789222-151789223(-) m6A CDS       24284625
chr1:151789719-151789720(-) m6A CDS       27371828
chr1:151798447-151798448(-) m6A 5'UTR//intron       27371828
chr1:151798467-151798468(-) m6A 5'UTR//intron       27371828
chr1:151801913-151801914(-) m6A CDS       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-5p
Exosome Primary dendritic cells     21505438
RORC
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-5p
Interactor2: RORC

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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