Basic Information:

  VIRBase ID:  

VHID00472647

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          RNASEL:  NM_021133     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	RNASEL
miRBase Accession/Entrez ID	MIMAT0003712	6041
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PRCA1//RNS4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RNASEL	chr1:182545832(-) A-I      intronic chr1:182545829(-) A-I      intronic chr1:182545899(-) A-I      intronic chr1:182545907(-) A-I      intronic chr1:182545925(-) A-I      intronic chr1:182545938(-) A-I      intronic chr1:182546213(-) A-I      intronic chr1:182546223(-) A-I      intronic chr1:182546224(-) A-I      intronic chr1:182545799(-) A-I      intronic chr1:182546312(-) A-I      intronic chr1:182546247(-) A-I      intronic chr1:182545810(-) A-I      intronic chr1:182545822(-) A-I      intronic chr1:182545931(-) A-I      intronic chr1:182545885(-) A-I      intronic chr1:182545745(-) A-I      intronic chr1:182550684(-) A-I      intronic chr1:182550611(-) A-I      intronic chr1:182546252(-) A-I      intronic chr1:182546290(-) A-I      intronic chr1:182545836(-) A-I      intronic chr1:182545757(-) A-I      intronic chr1:182545759(-) A-I      intronic chr1:182545924(-) A-I      intronic chr1:182546269(-) A-I      intronic chr1:182545839(-) A-I      intronic chr1:182545833(-) A-I      intronic chr1:182545879(-) A-I      intronic chr1:182545758(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RNASEL	chr1:182545757(-) A-G intron -    22484847 chr1:182545758(-) A-G intron -    22484847 chr1:182545833(-) A-G intron -    22484847 chr1:182545836(-) A-G intron -    22484847 chr1:182545839(-) A-G intron -    22484847 chr1:182545879(-) A-G intron -    22484847 chr1:182545885(-) A-G intron -    22484847 chr1:182545924(-) A-G intron -    22484847 chr1:182545931(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RNASEL	chr1:182544522-182544523(-) m6A 3'UTR       24981863 chr1:182544584-182544585(-) m6A CDS       24981863 chr1:182544597-182544598(-) m6A CDS       24981863 chr1:182548898-182548899(-) m6A 3'UTR//intron       - chr1:182548912-182548913(-) m6A 3'UTR//intron       - chr1:182548930-182548931(-) m6A 3'UTR//intron       - chr1:182548955-182548956(-) m6A 3'UTR//intron       - chr1:182554519-182554520(-) m6A CDS       - chr1:182554623-182554624(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr1:182554700-182554701(-) m6A CDS       24284625//24981863//27773535//22608085 chr1:182554861-182554862(-) m6A CDS       22608085 chr1:182554937-182554938(-) m6A CDS       22608085 chr1:182555089-182555090(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:182555095-182555096(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr1:182555118-182555119(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr1:182555132-182555133(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr1:182555220-182555221(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr1:182555261-182555262(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr1:182555404-182555405(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:182555472-182555473(-) m6A CDS       24284625//24981863//27773535//22608085 chr1:182555614-182555615(-) m6A CDS       24981863//22608085 chr1:182555713-182555714(-) m6A CDS       24284625//24981863//22608085 chr1:182555723-182555724(-) m6A CDS       24284625//24981863//22608085 chr1:182555760-182555761(-) m6A CDS       24284625//24981863//22608085 chr1:182555867-182555868(-) m6A CDS       24284625//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	RNASEL	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: RNASEL

Evidence Support:

Prediction-Evidence	PITA//RNAHybrid
Support Database	VmiReg