Basic Information:

  VIRBase ID:  

VHID00472182

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          MGST3:  NM_004528     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	MGST3
miRBase Accession/Entrez ID	MIMAT0003712	4259
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GST-III

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MGST3	chr1:165617039(+) A-I      ncRNA chr1:165626568(+) A-I      intronic chr1:165626536(+) A-I      intronic chr1:165626526(+) A-I      intronic chr1:165625164(+) A-I      intronic chr1:165625140(+) A-I      intronic chr1:165617807(+) A-I      ncRNA chr1:165617791(+) A-I      ncRNA chr1:165625163(+) A-I      intronic chr1:165617836(+) A-I      ncRNA chr1:165625160(+) A-I      intronic chr1:165613229(+) A-I      intronic chr1:165613228(+) A-I      intronic chr1:165625156(+) A-I      intronic chr1:165617034(+) A-I      ncRNA chr1:165613220(+) A-I      intronic chr1:165613223(+) A-I      intronic chr1:165626446(+) A-I      intronic chr1:165605506(+) A-I      intronic chr1:165617631(+) A-I      intronic chr1:165617801(+) A-I      ncRNA chr1:165628188(+) A-I      intronic chr1:165605542(+) A-I      intronic chr1:165628736(+) A-I      intronic chr1:165605735(+) A-I      intronic chr1:165628194(+) A-I      intronic chr1:165626463(+) A-I      intronic chr1:165608961(+) A-I      intronic chr1:165629743(+) A-I      intronic chr1:165625247(+) A-I      intronic chr1:165605516(+) A-I      intronic chr1:165617029(+) A-I      ncRNA chr1:165617037(+) A-I      ncRNA chr1:165616977(+) A-I      ncRNA chr1:165617131(+) A-I      ncRNA chr1:165617072(+) A-I      ncRNA chr1:165617132(+) A-I      ncRNA chr1:165617816(+) A-I      ncRNA chr1:165617045(+) A-I      ncRNA chr1:165617059(+) A-I      ncRNA chr1:165605525(+) A-I      intronic chr1:165625246(+) A-I      intronic chr1:165605853(+) A-I      intronic chr1:165605880(+) A-I      intronic chr1:165605718(+) A-I      intronic chr1:165605717(+) A-I      intronic chr1:165628729(+) A-I      intronic chr1:165610341(+) A-I      intronic chr1:165628698(+) A-I      intronic chr1:165628164(+) A-I      intronic chr1:165613236(+) A-I      intronic chr1:165628163(+) A-I      intronic chr1:165605478(+) A-I      intronic chr1:165617144(+) A-I      intronic chr1:165626527(+) A-I      intronic chr1:165626553(+) A-I      intronic chr1:165623807(+) A-I      intronic chr1:165605843(+) A-I      intronic chr1:165612765(+) A-I      intronic chr1:165617640(+) A-I      intronic chr1:165605847(+) A-I      intronic chr1:165628638(+) A-I      intronic chr1:165605492(+) A-I      intronic chr1:165628094(+) A-I      intronic chr1:165628579(+) A-I      intronic chr1:165628195(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MGST3	chr1:165605463(+) A-I intron -    21960545 chr1:165605492(+) A-I intron -    21960545 chr1:165605478(+) A-G intron -    22484847 chr1:165605492(+) A-G intron -    22484847 chr1:165605717(+) A-G intron -    22484847 chr1:165605718(+) A-G intron -    22484847 chr1:165605843(+) A-G intron -    22484847 chr1:165605853(+) A-G intron -    22484847 chr1:165617037(+) A-G intron -    22484847 chr1:165617072(+) A-G intron -    22484847 chr1:165617640(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MGST3	chr1:165601469-165601470(+) m6A 5'UTR//intron       24981863 chr1:165604965-165604966(+) m6A 5'UTR//intron       24981863 chr1:165619211-165619212(+) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	MGST3	Exosome Blood     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: MGST3

Evidence Support:

Prediction-Evidence	PITA//RNAHybrid
Support Database	VmiReg