Basic Information:

  VIRBase ID:  

VHID00471851

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          HDGF:  NR_135008     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	HDGF
miRBase Accession/Entrez ID	MIMAT0003712	3068
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HMG1L2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HDGF	chr1:156711914-156711915(-) m6A 3'UTR       27773535 chr1:156711946-156711947(-) m6A 3'UTR       27773535 chr1:156712092-156712093(-) m6A 3'UTR       27773535//22575960 chr1:156712308-156712309(-) m6A 3'UTR       26404942 chr1:156712365-156712366(-) m6A 3'UTR//exon       26404942 chr1:156712379-156712380(-) m6A 3'UTR//exon       26404942 chr1:156712448-156712449(-) m6A 3'UTR//exon       26404942 chr1:156712484-156712485(-) Tm 3'UTR//exon       - chr1:156712689-156712690(-) m6A 3'UTR//exon       27773535 chr1:156712876-156712877(-) m6A 3'UTR//exon//intron       24284625//25456834//27773536//22575960 chr1:156712928-156712929(-) m6A 3'UTR//exon//intron       24284625//25456834//27773536//22575960 chr1:156713151-156713152(-) m6A 3'UTR//exon       24284625//27773535//27371828//27773536//22575960 chr1:156713158-156713159(-) m6A 3'UTR//exon       24284625//27773535//27371828//27773536//22575960 chr1:156713176-156713177(-) m6A 3'UTR//exon       24284625//27773535//27371828//27773536//22575960 chr1:156713320-156713321(-) m6A exon//intron       24284625//27773535//27371828//27773536 chr1:156713400-156713401(-) m6A exon//intron       24209618//25456834//24981863//27773535//27371828//27773536 chr1:156713410-156713411(-) m6A exon//intron       24209618//25456834//24981863//27773535//27371828//27773536 chr1:156713515-156713516(-) m1A CDS//exon       26863196 chr1:156713638-156713639(-) m6A CDS//exon       24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960 chr1:156713964-156713965(-) m6A CDS//exon       24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960 chr1:156714104-156714105(-) m6A CDS//exon       24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960 chr1:156714830-156714831(-) m6A CDS//exon       24209618//24981863//26404942//27773535//27371828//27773536//22575960 chr1:156714917-156714918(-) m6A CDS//exon       24209618//24981863//26404942//27773535//27371828//27773536//22575960 chr1:156715042-156715043(-) m6A exon//intron       - chr1:156715098-156715099(-) m6A CDS//exon       27773535 chr1:156717250-156717251(-) m6A exon//intron       27773535//22575960 chr1:156721180-156721181(-) m6A CDS//exon//intron       24209618//27371828//22575960 chr1:156721276-156721277(-) m6A 5'UTR//exon//intron       24209618//27371828//27773536//22575960 chr1:156721457-156721458(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960 chr1:156721463-156721464(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536 chr1:156721521-156721522(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828 chr1:156721872-156721873(-) m6A CDS//intron       24284625//25456834//24981863//27773535 chr1:156721928-156721929(-) m6A 5'UTR//intron       24981863 chr1:156721994-156721995(-) m6A 5'UTR//intron       24981863 chr1:156722095-156722096(-) m6A CDS//intron       24981863//27773535 chr1:156722180-156722181(-) m6A 5'UTR//intron       24981863 chr1:156722236-156722237(-) m6A 5'UTR//intron       24981863 chr1:156725343-156725344(-) m6A exon       24981863 chr1:156725356-156725357(-) m6A exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	HDGF	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: HDGF

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg