Detail Information

Basic Information:


  VIRBase ID:  

VHID00471476

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:           DHODH:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-5p DHODH
miRBase
Accession/Entrez ID		 MIMAT0003712 1723
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - DHOdehase//POADS//URA1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DHODH
chr16:72058675(+) A-I      3'UTR
chr16:72053020(+) A-I      intronic
chr16:72058716(+) A-I      3'UTR
chr16:72058737(+) A-I      3'UTR
chr16:72058725(+) A-I      3'UTR
chr16:72058705(+) A-I      3'UTR
chr16:72058689(+) A-I      3'UTR
chr16:72051562(+) A-I      intronic
chr16:72058652(+) A-I      3'UTR
chr16:72058850(+) A-I      3'UTR
chr16:72058691(+) A-I      3'UTR
chr16:72058690(+) A-I      3'UTR
chr16:72058647(+) A-I      3'UTR
chr16:72058741(+) A-I      3'UTR
chr16:72058620(+) A-I      3'UTR
chr16:72055845(+) A-I      intronic
chr16:72055871(+) A-I      intronic
chr16:72053107(+) A-I      intronic
chr16:72054388(+) A-I      intronic
chr16:72053808(+) A-I      intronic
chr16:72055841(+) A-I      intronic
chr16:72053922(+) A-I      intronic
chr16:72058717(+) A-I      3'UTR
chr16:72045336(+) A-I      intronic
chr16:72054440(+) A-I      intronic
chr16:72051860(+) A-I      intronic
chr16:72054064(+) A-I      intronic
chr16:72043882(+) A-I      intronic
chr16:72044899(+) A-I      intronic
chr16:72045309(+) A-I      intronic
chr16:72052984(+) A-I      intronic
chr16:72054512(+) A-I      intronic
chr16:72053813(+) A-I      intronic
chr16:72052972(+) A-I      intronic
chr16:72051880(+) A-I      intronic
chr16:72054013(+) A-I      intronic
chr16:72054157(+) A-I      intronic
chr16:72054068(+) A-I      intronic
chr16:72054100(+) A-I      intronic
chr16:72045399(+) A-I      intronic
chr16:72054087(+) A-I      intronic
chr16:72054486(+) A-I      intronic
chr16:72052955(+) A-I      intronic
chr16:72053777(+) A-I      intronic
chr16:72053786(+) A-I      intronic
chr16:72055698(+) A-I      intronic
chr16:72052924(+) A-I      intronic
chr16:72052934(+) A-I      intronic
chr16:72055956(+) A-I      intronic
chr16:72054331(+) A-I      intronic
chr16:72054055(+) A-I      intronic
chr16:72043899(+) A-I      intronic
chr16:72058721(+) A-I      3'UTR
chr16:72058757(+) A-I      3'UTR
chr16:72058709(+) A-I      3'UTR
chr16:72058748(+) A-I      3'UTR
chr16:72058753(+) A-I      3'UTR
chr16:72058856(+) A-I      3'UTR
chr16:72058711(+) A-I      3'UTR
chr16:72058612(+) A-I      3'UTR
chr16:72058715(+) A-I      3'UTR
chr16:72058714(+) A-I      3'UTR
chr16:72058611(+) A-I      3'UTR
chr16:72058780(+) A-I      3'UTR
chr16:72058818(+) A-I      3'UTR
chr16:72058702(+) A-I      3'UTR
chr16:72058817(+) A-I      3'UTR
chr16:72058747(+) A-I      3'UTR
chr16:72058774(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DHODH
chr16:72052933(+) A-I intron -    22327324
chr16:72058817(+) A-I intron -    22327324
chr16:72051567(+) T-C intron -    22484847
chr16:72052933(+) T-C intron -    22484847
chr16:72053790(+) T-C intron -    22484847
chr16:72053808(+) A-G intron -    22484847
chr16:72054055(+) A-G intron -    22484847
chr16:72054064(+) A-G intron -    22484847
chr16:72054068(+) A-G intron -    22484847
chr16:72054393(+) T-C intron -    22484847
chr16:72054399(+) T-C intron -    22484847
chr16:72054440(+) A-G intron -    22484847
chr16:72055870(+) T-C intron -    22484847
chr16:72058611(+) A-G intron -    22484847
chr16:72058711(+) A-G intron -    22484847
chr16:72058748(+) A-G intron -    22484847
chr16:72058817(+) A-G intron -    22484847
chr16:72058818(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DHODH
chr16:72042634-72042635(+) m6A 5'UTR       24981863
chr16:72042674-72042675(+) m6A CDS       24981863
chr16:72042717-72042718(+) m6A 5'UTR//intron       24981863
chr16:72042724-72042725(+) m6A 5'UTR//intron       24981863
chr16:72042768-72042769(+) m6A 5'UTR//intron       24981863
chr16:72043014-72043015(+) m6A 5'UTR//intron       25456834//24981863
chr16:72043025-72043026(+) m6A 5'UTR//intron       25456834//24981863
chr16:72045989-72045990(+) m6A 5'UTR//CDS       25456834//24981863
chr16:72046043-72046044(+) m6A CDS       25456834
chr16:72046075-72046076(+) m6A CDS       -
chr16:72048454-72048455(+) m6A 3'UTR//CDS//exon       24981863
chr16:72048505-72048506(+) m6A 3'UTR//CDS//exon       24981863
chr16:72049772-72049773(+) m6A exon//intron       27773535
chr16:72050541-72050542(+) m6A exon//intron       27773535
chr16:72050958-72050959(+) m6A 3'UTR//CDS//exon       24981863
chr16:72050976-72050977(+) m6A 3'UTR//CDS//exon       24981863
chr16:72056351-72056352(+) m6A CDS//intron       24284625
chr16:72057091-72057092(+) m6A CDS//exon//intron       24284625
chr16:72057514-72057515(+) m6A CDS//exon//intron       24284625//24209618//22608085
chr16:72058100-72058101(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr16:72058129-72058130(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr16:72058141-72058142(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr16:72058180-72058181(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:72058285-72058286(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:72058292-72058293(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:72058299-72058300(+) Y 3'UTR//exon       26075521
chr16:72058321-72058322(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:72058348-72058349(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr16:72058398-72058399(+) m6A 3'UTR//exon       24284625//24981863//22608085
chr16:72058504-72058505(+) m6A 3'UTR       24981863
chr16:72058554-72058555(+) m6A 3'UTR       24981863
chr16:72058577-72058578(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-5p
Exosome Primary dendritic cells     21505438
DHODH
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-5p
Interactor2: DHODH

Evidence Support:


Prediction-Evidence RNAHybrid//Targetscan
Support Database VmiReg

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