Basic Information:

  VIRBase ID:  

VHID00471349

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-5p:  MIMAT0003712          CLPTM1:  NM_001282176     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-5p	CLPTM1
miRBase Accession/Entrez ID	MIMAT0003712	1209
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLPTM1	chr19:45485521(+) A-I      intronic chr19:45482457(+) A-I      intronic chr19:45485547(+) A-I      intronic chr19:45483502(+) A-I      intronic chr19:45485531(+) A-I      intronic chr19:45463398(+) A-I      intronic chr19:45485356(+) A-I      intronic chr19:45485342(+) A-I      intronic chr19:45485008(+) A-I      intronic chr19:45483627(+) A-I      intronic chr19:45484992(+) A-I      intronic chr19:45483579(+) A-I      intronic chr19:45483580(+) A-I      intronic chr19:45484234(+) A-I      intronic chr19:45484290(+) A-I      intronic chr19:45484297(+) A-I      intronic chr19:45466585(+) A-I      intronic chr19:45484479(+) A-I      intronic chr19:45481228(+) A-I      intronic chr19:45481222(+) A-I      intronic chr19:45481212(+) A-I      intronic chr19:45481176(+) A-I      intronic chr19:45484641(+) A-I      intronic chr19:45481101(+) A-I      intronic chr19:45484703(+) A-I      intronic chr19:45484817(+) A-I      intronic chr19:45484835(+) A-I      intronic chr19:45484914(+) A-I      intronic chr19:45484923(+) A-I      intronic chr19:45484994(+) A-I      intronic chr19:45485025(+) A-I      intronic chr19:45485332(+) A-I      intronic chr19:45485359(+) A-I      intronic chr19:45478961(+) A-I      intronic chr19:45478914(+) A-I      intronic chr19:45468964(+) A-I      intronic chr19:45468579(+) A-I      intronic chr19:45467412(+) A-I      intronic chr19:45467346(+) A-I      intronic chr19:45467135(+) A-I      intronic chr19:45467075(+) A-I      intronic chr19:45466951(+) A-I      intronic chr19:45466139(+) A-I      intronic chr19:45466135(+) A-I      intronic chr19:45466134(+) A-I      intronic chr19:45466111(+) A-I      intronic chr19:45466068(+) A-I      intronic chr19:45466009(+) A-I      intronic chr19:45481324(+) A-I      intronic chr19:45481332(+) A-I      intronic chr19:45486986(+) A-I      intronic chr19:45488001(+) A-I      intronic chr19:45488024(+) A-I      intronic chr19:45482446(+) A-I      intronic chr19:45486760(+) A-I      intronic chr19:45486718(+) A-I      intronic chr19:45486698(+) A-I      intronic chr19:45486680(+) A-I      intronic chr19:45486653(+) A-I      intronic chr19:45486623(+) A-I      intronic chr19:45486273(+) A-I      intronic chr19:45486250(+) A-I      intronic chr19:45486238(+) A-I      intronic chr19:45485617(+) A-I      intronic chr19:45481459(+) A-I      intronic chr19:45481475(+) A-I      intronic chr19:45481476(+) A-I      intronic chr19:45481486(+) A-I      intronic chr19:45481531(+) A-I      intronic chr19:45481541(+) A-I      intronic chr19:45481551(+) A-I      intronic chr19:45481568(+) A-I      intronic chr19:45481287(+) A-I      intronic chr19:45485410(+) A-I      intronic chr19:45485396(+) A-I      intronic chr19:45481587(+) A-I      intronic chr19:45485373(+) A-I      intronic chr19:45482301(+) A-I      intronic chr19:45482314(+) A-I      intronic chr19:45482330(+) A-I      intronic chr19:45482349(+) A-I      intronic chr19:45486965(+) A-I      intronic chr19:45482402(+) A-I      intronic chr19:45483567(+) A-I      intronic chr19:45486787(+) A-I      intronic chr19:45486288(+) A-I      intronic chr19:45488045(+) A-I      intronic chr19:45482269(+) A-I      intronic chr19:45488049(+) A-I      intronic chr19:45486692(+) A-I      intronic chr19:45486830(+) A-I      intronic chr19:45484960(+) A-I      intronic chr19:45486207(+) A-I      intronic chr19:45486064(+) A-I      intronic chr19:45488168(+) A-I      intronic chr19:45488031(+) A-I      intronic chr19:45481118(+) A-I      intronic chr19:45483663(+) A-I      intronic chr19:45467136(+) A-I      intronic chr19:45484000(+) A-I      intronic chr19:45470753(+) A-I      intronic chr19:45487964(+) A-I      intronic chr19:45488014(+) A-I      intronic chr19:45486690(+) A-I      intronic chr19:45484528(+) A-I      intronic chr19:45481831(+) A-I      intronic chr19:45487171(+) A-I      intronic chr19:45486132(+) A-I      intronic chr19:45481453(+) A-I      intronic chr19:45489424(+) A-I      intronic chr19:45470429(+) A-I      intronic chr19:45481614(+) A-I      intronic chr19:45481157(+) A-I      intronic chr19:45484305(+) A-I      intronic chr19:45488221(+) A-I      intronic chr19:45486789(+) A-I      intronic chr19:45484660(+) A-I      intronic chr19:45482411(+) A-I      intronic chr19:45481504(+) A-I      intronic chr19:45486715(+) A-I      intronic chr19:45481528(+) A-I      intronic chr19:45487041(+) A-I      intronic chr19:45484516(+) A-I      intronic chr19:45485424(+) A-I      intronic chr19:45487099(+) A-I      intronic chr19:45484538(+) A-I      intronic chr19:45482392(+) A-I      intronic chr19:45484360(+) A-I      intronic chr19:45486161(+) A-I      intronic chr19:45484274(+) A-I      intronic chr19:45466008(+) A-I      intronic chr19:45484659(+) A-I      intronic chr19:45486257(+) A-I      intronic chr19:45485048(+) A-I      intronic chr19:45487036(+) A-I      intronic chr19:45479347(+) A-I      intronic chr19:45485047(+) A-I      intronic chr19:45486714(+) A-I      intronic chr19:45484463(+) A-I      intronic chr19:45466844(+) A-I      intronic chr19:45482272(+) A-I      intronic chr19:45483646(+) A-I      intronic chr19:45488199(+) A-I      intronic chr19:45482366(+) A-I      intronic chr19:45484793(+) A-I      intronic chr19:45485444(+) A-I      intronic chr19:45482420(+) A-I      intronic chr19:45485512(+) A-I      intronic chr19:45488044(+) A-I      intronic chr19:45486717(+) A-I      intronic chr19:45488074(+) A-I      intronic chr19:45488147(+) A-I      intronic chr19:45483556(+) A-I      intronic chr19:45469046(+) A-I      intronic chr19:45486825(+) A-I      intronic chr19:45479675(+) A-I      intronic chr19:45486824(+) A-I      intronic chr19:45483754(+) A-I      intronic chr19:45482306(+) A-I      intronic chr19:45485450(+) A-I      intronic chr19:45485446(+) A-I      intronic chr19:45481260(+) A-I      intronic chr19:45479709(+) A-I      intronic chr19:45481500(+) A-I      intronic chr19:45483645(+) A-I      intronic chr19:45485486(+) A-I      intronic chr19:45483619(+) A-I      intronic chr19:45488039(+) A-I      intronic chr19:45481408(+) A-I      intronic chr19:45481850(+) A-I      intronic chr19:45487011(+) A-I      intronic chr19:45466789(+) A-I      intronic chr19:45485452(+) A-I      intronic chr19:45467137(+) A-I      intronic chr19:45467748(+) A-I      intronic chr19:45486666(+) A-I      intronic chr19:45485485(+) A-I      intronic chr19:45484991(+) A-I      intronic chr19:45484116(+) A-I      intronic chr19:45468493(+) A-I      intronic chr19:45485021(+) A-I      intronic chr19:45483512(+) A-I      intronic chr19:45486133(+) A-I      intronic chr19:45487144(+) A-I      intronic chr19:45484915(+) A-I      intronic chr19:45481224(+) A-I      intronic chr19:45481196(+) A-I      intronic chr19:45470755(+) A-I      intronic chr19:45484280(+) A-I      intronic chr19:45483976(+) A-I      intronic chr19:45484834(+) A-I      intronic chr19:45488003(+) A-I      intronic chr19:45481223(+) A-I      intronic chr19:45487032(+) A-I      intronic chr19:45482510(+) A-I      intronic chr19:45486269(+) A-I      intronic chr19:45485146(+) A-I      intronic chr19:45486259(+) A-I      intronic chr19:45482417(+) A-I      intronic chr19:45488062(+) A-I      intronic chr19:45474933(+) A-I      intronic chr19:45488084(+) A-I      intronic chr19:45485377(+) A-I      intronic chr19:45483954(+) A-I      intronic chr19:45485344(+) A-I      intronic chr19:45486179(+) A-I      intronic chr19:45487072(+) A-I      intronic chr19:45481126(+) A-I      intronic chr19:45488102(+) A-I      intronic chr19:45484560(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CLPTM1	chr19:45483645(+) A-G intron -    22484847 chr19:45483646(+) A-G intron -    22484847 chr19:45484305(+) A-G intron -    22484847 chr19:45485029(+) A-G intron -    22484847 chr19:45485047(+) A-G intron -    22484847 chr19:45485424(+) A-G intron -    22484847 chr19:45485425(+) A-G intron -    22484847 chr19:45488003(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLPTM1	chr19:45458057-45458058(+) m6A 5'UTR//intron       27773535 chr19:45458072-45458073(+) m6A 5'UTR//intron       27773535 chr19:45458081-45458082(+) m6A 5'UTR//intron       27773535 chr19:45458107-45458108(+) m6A 5'UTR//intron       27773535 chr19:45458264-45458265(+) m6A 5'UTR//intron       24981863 chr19:45458307-45458308(+) m6A 5'UTR//intron       24981863 chr19:45458637-45458638(+) m6A 5'UTR//intron       24209618//25456834//24981863 chr19:45458840-45458841(+) m6A 5'UTR//intron       24209618//24981863 chr19:45458870-45458871(+) m6A 5'UTR//intron       24209618 chr19:45465247-45465248(+) m6A 5'UTR//CDS//exon       24981863 chr19:45465261-45465262(+) m6A 5'UTR//CDS//exon       24981863 chr19:45465274-45465275(+) m6A 5'UTR//CDS//exon       24981863 chr19:45476399-45476400(+) m6A 5'UTR//CDS//exon       24981863 chr19:45476456-45476457(+) m6A 5'UTR//CDS//exon       - chr19:45477766-45477767(+) m6A CDS//exon//intron       22575960 chr19:45477794-45477795(+) m6A CDS//exon//intron       22575960 chr19:45477807-45477808(+) m6A CDS//exon//intron       22575960 chr19:45480663-45480664(+) m6A CDS//exon       24284625//24981863//27773535//22575960 chr19:45487566-45487567(+) m6A exon//intron       24284625//24981863 chr19:45487579-45487580(+) m6A exon//intron       24284625//24981863 chr19:45487598-45487599(+) m6A exon//intron       24284625//24981863 chr19:45487788-45487789(+) m6A exon//intron       24981863 chr19:45488510-45488511(+) m6A CDS//exon       24981863//22575960 chr19:45488517-45488518(+) m6A CDS//exon       24981863//22575960 chr19:45488534-45488535(+) m6A CDS//exon       24981863//22575960 chr19:45488544-45488545(+) m6A CDS//exon       24284625//24981863//26404942//22575960 chr19:45489722-45489723(+) m6A CDS//exon       24284625//24981863//26404942//22575960 chr19:45490017-45490018(+) m6A exon//intron       24981863 chr19:45490025-45490026(+) m6A exon//intron       24981863 chr19:45490079-45490080(+) m6A exon//intron       24981863 chr19:45490499-45490500(+) m6A CDS//exon       26404942 chr19:45490511-45490512(+) m6A CDS//exon       26404942 chr19:45494609-45494610(+) Y CDS//intron       26075521 chr19:45495955-45495956(+) m6A CDS       24284625//22575960 chr19:45496138-45496139(+) m6A CDS       24284625//25456834//24981863//27371828//22575960 chr19:45496160-45496161(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:45496247-45496248(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr19:45496537-45496538(+) m6A 3'UTR       24981863 chr19:45496594-45496595(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-5p	Exosome Primary dendritic cells     21505438
	CLPTM1	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-5p
Interactor2: CLPTM1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg