Basic Information:

  VIRBase ID:  

VHID00470467

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:  MIMAT0002193          SLC26A11:  NM_001166349     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-3-5p	SLC26A11
miRBase Accession/Entrez ID	MIMAT0002193	284129
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC26A11	chr17:78218610(+) A-I      intronic chr17:78216572(+) A-I      intronic chr17:78218655(+) A-I      intronic chr17:78218660(+) A-I      intronic chr17:78206895(+) A-I      intronic chr17:78206927(+) A-I      intronic chr17:78207032(+) A-I      intronic chr17:78207037(+) A-I      intronic chr17:78207639(+) A-I      intronic chr17:78203933(+) A-I      intronic chr17:78216705(+) A-I      intronic chr17:78200262(+) A-I      intronic chr17:78200285(+) A-I      intronic chr17:78200379(+) A-I      intronic chr17:78203883(+) A-I      intronic chr17:78207651(+) A-I      intronic chr17:78207987(+) A-I      intronic chr17:78209204(+) A-I      intronic chr17:78212809(+) A-I      intronic chr17:78212815(+) A-I      intronic chr17:78212996(+) A-I      intronic chr17:78213004(+) A-I      intronic chr17:78213125(+) A-I      intronic chr17:78213130(+) A-I      intronic chr17:78214503(+) A-I      intronic chr17:78216556(+) A-I      intronic chr17:78216637(+) A-I      intronic chr17:78218591(+) A-I      intronic chr17:78218715(+) A-I      intronic chr17:78218744(+) A-I      intronic chr17:78218753(+) A-I      intronic chr17:78218757(+) A-I      intronic chr17:78203900(+) A-I      intronic chr17:78206785(+) A-I      intronic chr17:78206894(+) A-I      intronic chr17:78215928(+) A-I      intronic chr17:78202171(+) A-I      intronic chr17:78206896(+) A-I      intronic chr17:78207062(+) A-I      intronic chr17:78215915(+) A-I      intronic chr17:78214739(+) A-I      intronic chr17:78206822(+) A-I      intronic chr17:78203835(+) A-I      intronic chr17:78200339(+) A-I      intronic chr17:78215152(+) A-I      intronic chr17:78216534(+) A-I      intronic chr17:78216691(+) A-I      intronic chr17:78206789(+) A-I      intronic chr17:78218664(+) A-I      intronic chr17:78207984(+) A-I      intronic chr17:78213450(+) A-I      intronic chr17:78218641(+) A-I      intronic chr17:78217464(+) A-I      intronic chr17:78206937(+) A-I      intronic chr17:78217380(+) A-I      intronic chr17:78207667(+) A-I      intronic chr17:78224846(+) A-I      intronic chr17:78206897(+) A-I      intronic chr17:78218568(+) A-I      intronic chr17:78207033(+) A-I      intronic chr17:78218687(+) A-I      intronic chr17:78218599(+) A-I      intronic chr17:78203843(+) A-I      intronic chr17:78215144(+) A-I      intronic chr17:78212935(+) A-I      intronic chr17:78224932(+) A-I      intronic chr17:78202012(+) A-I      intronic chr17:78206882(+) A-I      intronic chr17:78206928(+) A-I      intronic chr17:78213031(+) A-I      intronic chr17:78207191(+) A-I      intronic chr17:78202206(+) A-I      intronic chr17:78195855(+) A-I      intronic chr17:78203944(+) A-I      intronic chr17:78217417(+) A-I      intronic chr17:78216710(+) A-I      intronic chr17:78211966(+) A-I      intronic chr17:78219328(+) A-I      intronic chr17:78208729(+) A-I      intronic chr17:78206901(+) A-I      intronic chr17:78215321(+) A-I      intronic chr17:78206837(+) A-I      intronic chr17:78207561(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC26A11	chr17:78217417(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC26A11	chr17:78194271-78194272(+) m6A 5'UTR//exon//intron       24981863 chr17:78194725-78194726(+) m6A 5'UTR//exon//intron       24981863 chr17:78194786-78194787(+) m6A 5'UTR//exon//intron       24284625 chr17:78194858-78194859(+) m6A 5'UTR//exon//intron       24284625 chr17:78195096-78195097(+) m6A exon//intron       25456834 chr17:78195661-78195662(+) m6A exon//intron       24981863 chr17:78195705-78195706(+) m6A exon//intron       24981863 chr17:78195780-78195781(+) m6A exon//intron       24981863 chr17:78195840-78195841(+) m6A exon//intron       24981863 chr17:78195863-78195864(+) m6A exon//intron       24981863 chr17:78221934-78221935(+) m6A CDS       24284625 chr17:78226474-78226475(+) m6A 3'UTR//CDS       24284625//24981863 chr17:78226486-78226487(+) m6A 3'UTR//CDS       24284625//24981863 chr17:78226601-78226602(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr17:78226622-78226623(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:78226794-78226795(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-3-5p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438 Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973 Exosome K562 cells     24460325
	SLC26A11	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-3-5p
Interactor2: SLC26A11

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg