Detail Information

Basic Information:


  VIRBase ID:  

VHID00469866

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:           SEC16B:      

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Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-3-5p SEC16B
miRBase
Accession/Entrez ID		 MIMAT0002193 89866
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - LZTR2//PGPR-p117//RGPR//RGPR-p117//SEC16S

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SEC16B
chr1:177931759(-) A-I      intronic
chr1:177931824(-) A-I      intronic
chr1:177931842(-) A-I      intronic
chr1:177931877(-) A-I      intronic
chr1:177931628(-) A-I      intronic
chr1:177931757(-) A-I      intronic
chr1:177931597(-) A-I      intronic
chr1:177931615(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SEC16B
chr1:177898579-177898580(-) m6A 3'UTR//exon       24981863
chr1:177898591-177898592(-) m6A 3'UTR//exon       24981863
chr1:177901630-177901631(-) m6A 3'UTR//CDS//exon       27773535
chr1:177933365-177933366(-) m6A CDS       27773535
chr1:177933387-177933388(-) m6A CDS       27773535
chr1:177933399-177933400(-) m6A CDS       27773535
chr1:177934191-177934192(-) m6A CDS       27773535
chr1:177934203-177934204(-) m6A CDS       27773535
chr1:177934223-177934224(-) m6A CDS       27773535
chr1:177934237-177934238(-) m6A CDS       27773535
chr1:177935055-177935056(-) m6A CDS       27773535
chr1:177936922-177936923(-) m6A CDS       24981863//27773535
chr1:177936964-177936965(-) m6A CDS       24981863//27773535
chr1:177937023-177937024(-) m6A CDS       25456834//24981863//27773535
chr1:177937045-177937046(-) m6A CDS       25456834//24981863//27773535
chr1:177937082-177937083(-) m6A CDS       25456834//24981863//27773535
chr1:177937110-177937111(-) m6A CDS       25456834//24981863//27773535
chr1:177937135-177937136(-) m6A 5'UTR       25456834//24981863//27773535
chr1:177937142-177937143(-) m6A 5'UTR       25456834//24981863//27773535
chr1:177940550-177940551(-) m6A intron       27773535
chr1:177940577-177940578(-) m6A intron       27773535
chr1:177942343-177942344(-) m6A intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-3-5p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973
Exosome K562 cells     24460325
SEC16B
Chromatin K562 cells     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-3-5p
Interactor2: SEC16B

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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