Detail Information

Basic Information:


  VIRBase ID:  

VHID00469431

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:           NAPB:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-3-5p NAPB
miRBase
Accession/Entrez ID		 MIMAT0002193 63908
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - SNAP-BETA//SNAPB

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NAPB
chr20:23359214(-) A-I      intronic
chr20:23373406(-) A-I      intronic
chr20:23373411(-) A-I      intronic
chr20:23359239(-) A-I      intronic
chr20:23373433(-) A-I      intronic
chr20:23379620(-) A-I      intronic
chr20:23359243(-) A-I      intronic
chr20:23359571(-) A-I      ncRNA
chr20:23358817(-) A-I      intronic
chr20:23373378(-) A-I      intronic
chr20:23373410(-) A-I      intronic
chr20:23359552(-) A-I      ncRNA
chr20:23358837(-) A-I      intronic
chr20:23373432(-) A-I      intronic
chr20:23359267(-) A-I      intronic
chr20:23358685(-) A-I      intronic
chr20:23359190(-) A-I      intronic
chr20:23359216(-) A-I      intronic
chr20:23359358(-) A-I      intronic
chr20:23379131(-) A-I      intronic
chr20:23379172(-) A-I      intronic
chr20:23379587(-) A-I      intronic
chr20:23384180(-) A-I      intronic
chr20:23396508(-) A-I      intronic
chr20:23397793(-) A-I      intronic
chr20:23397823(-) A-I      intronic
chr20:23397826(-) A-I      intronic
chr20:23397827(-) A-I      intronic
chr20:23358904(-) A-I      intronic
chr20:23373435(-) A-I      intronic
chr20:23358839(-) A-I      intronic
chr20:23358730(-) A-I      intronic
chr20:23358777(-) A-I      intronic
chr20:23379581(-) A-I      intronic
chr20:23358892(-) A-I      intronic
chr20:23358766(-) A-I      intronic
chr20:23359100(-) A-I      intronic
chr20:23379168(-) A-I      intronic
chr20:23379012(-) A-I      intronic
chr20:23379381(-) A-I      intronic
chr20:23358849(-) A-I      intronic
chr20:23358866(-) A-I      intronic
chr20:23381122(-) A-I      intronic
chr20:23379199(-) A-I      intronic
chr20:23359329(-) A-I      intronic
chr20:23358842(-) A-I      intronic
chr20:23379069(-) A-I      intronic
chr20:23358726(-) A-I      intronic
chr20:23379603(-) A-I      intronic
chr20:23359351(-) A-I      intronic
chr20:23381070(-) A-I      intronic
chr20:23359354(-) A-I      intronic
chr20:23380903(-) A-I      intronic
chr20:23379157(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NAPB
chr20:23356059(-) A-I exon 3'UTR    21960545
chr20:23373090(-) A-G intron -    22484847
chr20:23373100(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NAPB
chr20:23356510-23356511(-) m6A 3'UTR       24981863
chr20:23383703-23383704(-) m6A 5'UTR//CDS//exon       27371828
chr20:23402034-23402035(-) m6A 5'UTR//CDS//exon       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-3-5p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973
Exosome K562 cells     24460325
NAPB
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-3-5p
Interactor2: NAPB

Evidence Support:


Prediction-Evidence miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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