Detail Information

Basic Information:


  VIRBase ID:  

VHID00467836

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:           REEP5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-3-5p REEP5
miRBase
Accession/Entrez ID		 MIMAT0002193 7905
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - C5orf18//D5S346//DP1//POB16//TB2//Yip2e//YOP1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR REEP5
chr5:112236582(-) A-I      intronic
chr5:112236606(-) A-I      intronic
chr5:112255136(-) A-I      intronic
chr5:112225911(-) A-I      intronic
chr5:112255133(-) A-I      intronic
chr5:112255082(-) A-I      intronic
chr5:112255057(-) A-I      intronic
chr5:112255010(-) A-I      intronic
chr5:112252886(-) A-I      intronic
chr5:112249817(-) A-I      intronic
chr5:112249793(-) A-I      intronic
chr5:112249771(-) A-I      intronic
chr5:112249739(-) A-I      intronic
chr5:112249707(-) A-I      intronic
chr5:112249704(-) A-I      intronic
chr5:112249685(-) A-I      intronic
chr5:112241495(-) A-I      intronic
chr5:112241446(-) A-I      intronic
chr5:112237603(-) A-I      intronic
chr5:112237548(-) A-I      intronic
chr5:112237512(-) A-I      intronic
chr5:112217720(-) A-I      intronic
chr5:112236620(-) A-I      intronic
chr5:112236646(-) A-I      intronic
chr5:112217559(-) A-I      intronic
chr5:112241415(-) A-I      intronic
chr5:112217748(-) A-I      intronic
chr5:112217763(-) A-I      intronic
chr5:112225443(-) A-I      intronic
chr5:112225482(-) A-I      intronic
chr5:112225487(-) A-I      intronic
chr5:112225491(-) A-I      intronic
chr5:112225562(-) A-I      intronic
chr5:112225870(-) A-I      intronic
chr5:112236817(-) A-I      intronic
chr5:112226908(-) A-I      intronic
chr5:112226921(-) A-I      intronic
chr5:112226934(-) A-I      intronic
chr5:112226937(-) A-I      intronic
chr5:112226938(-) A-I      intronic
chr5:112226952(-) A-I      intronic
chr5:112236632(-) A-I      intronic
chr5:112236685(-) A-I      intronic
chr5:112217701(-) A-I      intronic
chr5:112237188(-) A-I      intronic
chr5:112225961(-) A-I      intronic
chr5:112226154(-) A-I      intronic
chr5:112226158(-) A-I      intronic
chr5:112226239(-) A-I      intronic
chr5:112226252(-) A-I      intronic
chr5:112226334(-) A-I      intronic
chr5:112226347(-) A-I      intronic
chr5:112226356(-) A-I      intronic
chr5:112236570(-) A-I      intronic
chr5:112225904(-) A-I      intronic
chr5:112225905(-) A-I      intronic
chr5:112213701(-) A-I      3'UTR
chr5:112213713(-) A-I      3'UTR
chr5:112213705(-) A-I      3'UTR
chr5:112213709(-) A-I      3'UTR
chr5:112213707(-) A-I      3'UTR
chr5:112213703(-) A-I      3'UTR
chr5:112213715(-) A-I      3'UTR
chr5:112213683(-) A-I      3'UTR
chr5:112229809(-) A-I      intronic
chr5:112236595(-) A-I      intronic
chr5:112225910(-) A-I      intronic
chr5:112245947(-) A-I      intronic
chr5:112216743(-) A-I      intronic
chr5:112229940(-) A-I      intronic
chr5:112230071(-) A-I      intronic
chr5:112229984(-) A-I      intronic
chr5:112228983(-) A-I      intronic
chr5:112245852(-) A-I      intronic
chr5:112235088(-) A-I      intronic
chr5:112228862(-) A-I      intronic
chr5:112245755(-) A-I      intronic
chr5:112245834(-) A-I      intronic
chr5:112229919(-) A-I      intronic
chr5:112244454(-) A-I      intronic
chr5:112237327(-) A-I      intronic
chr5:112236666(-) A-I      intronic
chr5:112236672(-) A-I      intronic
chr5:112229024(-) A-I      intronic
chr5:112237149(-) A-I      intronic
chr5:112236831(-) A-I      intronic
chr5:112249837(-) A-I      intronic
chr5:112230671(-) A-I      intronic
chr5:112236658(-) A-I      intronic
chr5:112249763(-) A-I      intronic
chr5:112236808(-) A-I      intronic
chr5:112236778(-) A-I      intronic
chr5:112249801(-) A-I      intronic
chr5:112225688(-) A-I      intronic
chr5:112232528(-) A-I      intronic
chr5:112235093(-) A-I      intronic
chr5:112249998(-) A-I      intronic
chr5:112233512(-) A-I      intronic
chr5:112230033(-) A-I      intronic
chr5:112237287(-) A-I      intronic
chr5:112244042(-) A-I      intronic
chr5:112232137(-) A-I      intronic
chr5:112230063(-) A-I      intronic
chr5:112237309(-) A-I      intronic
chr5:112236577(-) A-I      intronic
chr5:112216718(-) A-I      intronic
chr5:112244431(-) A-I      intronic
chr5:112235104(-) A-I      intronic
chr5:112237629(-) A-I      intronic
chr5:112244426(-) A-I      intronic
chr5:112233511(-) A-I      intronic
chr5:112236809(-) A-I      intronic
chr5:112229955(-) A-I      intronic
chr5:112232157(-) A-I      intronic
chr5:112236714(-) A-I      intronic
chr5:112229025(-) A-I      intronic
chr5:112245837(-) A-I      intronic
chr5:112249221(-) A-I      intronic
chr5:112245917(-) A-I      intronic
chr5:112244296(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED REEP5
chr5:112227556(-) A-I intron -    22327324
chr5:112227582(-) A-I intron -    22327324
chr5:112227585(-) A-I intron -    22327324
chr5:112227650(-) A-I intron -    22327324
chr5:112227789(-) A-I intron -    22327324
chr5:112227792(-) A-I intron -    22327324
chr5:112227906(-) A-I intron -    22327324
chr5:112228245(-) A-I intron -    22327324
chr5:112228323(-) A-I intron -    22327324
chr5:112229089(-) A-I intron -    22327324
chr5:112230073(-) A-I intron -    22327324
chr5:112230694(-) A-I intron -    22327324
chr5:112228865(-) T-C intron -    22484847
chr5:112229024(-) A-G intron -    22484847
chr5:112229025(-) A-G intron -    22484847
chr5:112229027(-) T-C intron -    22484847
chr5:112229028(-) T-C intron -    22484847
chr5:112229089(-) T-C intron -    22484847
chr5:112229919(-) A-G intron -    22484847
chr5:112230059(-) T-C intron -    22484847
chr5:112230073(-) T-C intron -    22484847
chr5:112230694(-) T-C intron -    22484847
chr5:112230707(-) T-C intron -    22484847
chr5:112232201(-) T-C intron -    22484847
chr5:112232507(-) T-C intron -    22484847
chr5:112232565(-) T-C intron -    22484847
chr5:112233511(-) A-G intron -    22484847
chr5:112233635(-) T-C intron -    22484847
chr5:112233636(-) T-C intron -    22484847
chr5:112235039(-) T-C intron -    22484847
chr5:112236538(-) G-A intron -    22484847
chr5:112236577(-) A-G intron -    22484847
chr5:112236595(-) A-G intron -    22484847
chr5:112236658(-) A-G intron -    22484847
chr5:112236714(-) A-G intron -    22484847
chr5:112236778(-) A-G intron -    22484847
chr5:112236808(-) A-G intron -    22484847
chr5:112236809(-) A-G intron -    22484847
chr5:112237223(-) A-G intron -    22484847
chr5:112237287(-) A-G intron -    22484847
chr5:112237309(-) A-G intron -    22484847
chr5:112237326(-) A-G intron -    22484847
chr5:112237551(-) A-G intron -    22484847
chr5:112237560(-) A-G intron -    22484847
chr5:112237573(-) A-G intron -    22484847
chr5:112237616(-) A-G intron -    22484847
chr5:112237629(-) A-G intron -    22484847
chr5:112237667(-) C-T intron -    22484847
chr5:112237915(-) C-A intron -    22484847
chr5:112244437(-) T-C intron -    22484847
chr5:112245947(-) A-G intron -    22484847
chr5:112248830(-) T-C intron -    22484847
chr5:112249703(-) A-G intron -    22484847
chr5:112249763(-) A-G intron -    22484847
chr5:112249801(-) A-G intron -    22484847
chr5:112249837(-) A-G intron -    22484847
chr5:112250098(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase REEP5
chr5:112213850-112213851(-) m6A 3'UTR//exon       27773535
chr5:112213914-112213915(-) m6A 3'UTR//exon       27773535
chr5:112213937-112213938(-) m6A 3'UTR//exon       27773535
chr5:112214377-112214378(-) m6A 3'UTR//exon       -
chr5:112214414-112214415(-) m6A 3'UTR//exon       -
chr5:112214465-112214466(-) m6A 3'UTR//exon       24981863//28052920//22575960
chr5:112214476-112214477(-) m6A 3'UTR//exon       24981863//28052920//22575960
chr5:112214481-112214482(-) m6A 3'UTR//exon       24981863//28052920//26404942//22575960
chr5:112214501-112214502(-) Am 3'UTR//CDS//exon       -
chr5:112222735-112222736(-) m6A 3'UTR//CDS//exon//intron       24981863//28052920//26404942//22575960
chr5:112222749-112222750(-) m6A 3'UTR//CDS//exon//intron       24981863//26404942
chr5:112222758-112222759(-) m6A 3'UTR//CDS//exon//intron       24981863//26404942
chr5:112222773-112222774(-) m6A 3'UTR//CDS//exon//intron       24981863//26404942
chr5:112222829-112222830(-) m6A 3'UTR//CDS//exon//intron       24981863
chr5:112228289-112228290(-) m6A 3'UTR//exon//intron       24981863
chr5:112228310-112228311(-) m6A 3'UTR//exon//intron       24981863
chr5:112228344-112228345(-) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr5:112228395-112228396(-) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr5:112228502-112228503(-) m6A CDS//exon//intron       24284625
chr5:112256942-112256943(-) m6A CDS//exon       27371828
chr5:112257050-112257051(-) m6A exon//intron       27371828
chr5:112257653-112257654(-) m6A 5'UTR//intron       24981863//27371828//27773536//22608085
chr5:112257662-112257663(-) m6A 5'UTR//intron       24981863//27371828//27773536//22608085
chr5:112257685-112257686(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr5:112257789-112257790(-) m6A CDS       24284625//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr5:112257799-112257800(-) m6A CDS       24284625//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr5:112257837-112257838(-) m6A CDS       24284625//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr5:112257916-112257917(-) m6A 5'UTR//CDS       24284625//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr5:112258153-112258154(-) m6A 5'UTR       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-3-5p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973
Exosome K562 cells     24460325
REEP5
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-3-5p
Interactor2: REEP5

Evidence Support:


Prediction-Evidence miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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