Detail Information

Basic Information:


  VIRBase ID:  

VHID00467722

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:           TLN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-3-5p TLN1
miRBase
Accession/Entrez ID		 MIMAT0002193 7094
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - ILWEQ//talin-1//TLN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TLN1
chr9:35703201(-) A-I      intronic
chr9:35703115(-) A-I      intronic
chr9:35702494(-) A-I      intronic
chr9:35702499(-) A-I      intronic
chr9:35729087(-) A-I      intronic
chr9:35729134(-) A-I      intronic
chr9:35703242(-) A-I      intronic
chr9:35729156(-) A-I      intronic
chr9:35729137(-) A-I      intronic
chr9:35729133(-) A-I      intronic
chr9:35729128(-) A-I      intronic
chr9:35729125(-) A-I      intronic
chr9:35729124(-) A-I      intronic
chr9:35729119(-) A-I      intronic
chr9:35729110(-) A-I      intronic
chr9:35729109(-) A-I      intronic
chr9:35729103(-) A-I      intronic
chr9:35729098(-) A-I      intronic
chr9:35729096(-) A-I      intronic
chr9:35729093(-) A-I      intronic
chr9:35729089(-) A-I      intronic
chr9:35703135(-) A-I      intronic
chr9:35703234(-) A-I      intronic
chr9:35703041(-) A-I      intronic
chr9:35702760(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TLN1
chr9:35697221-35697222(-) m6A 3'UTR       25456834//27773535
chr9:35697279-35697280(-) m6A 3'UTR       24981863//27773535
chr9:35697369-35697370(-) m6A 3'UTR       24284625//24981863//28052920//27773535
chr9:35697667-35697668(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22575960
chr9:35697749-35697750(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22575960
chr9:35697762-35697763(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22575960
chr9:35697850-35697851(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22575960
chr9:35697873-35697874(-) Gm CDS       -
chr9:35697875-35697876(-) Gm CDS       -
chr9:35698081-35698082(-) m6A CDS//exon       24981863//26404942//27773535//27371828//27773536//22575960
chr9:35698344-35698345(-) m6A CDS//exon       27773535//22575960
chr9:35698910-35698911(-) m6A CDS//exon       22575960
chr9:35699034-35699035(-) m6A CDS//exon       22575960
chr9:35699128-35699129(-) m6A CDS//exon       -
chr9:35699137-35699138(-) m6A CDS//exon       -
chr9:35699150-35699151(-) m6A CDS//exon       -
chr9:35699281-35699282(-) m6A exon//intron       -
chr9:35700342-35700343(-) m6A CDS       26404942
chr9:35703577-35703578(-) m6A CDS//exon       26404942//27773535
chr9:35703639-35703640(-) m6A CDS//exon       26404942//27773535//22575960
chr9:35703781-35703782(-) m6A CDS//exon       26404942//27773535//22575960
chr9:35703850-35703851(-) m6A CDS//exon       22575960
chr9:35703992-35703993(-) m6A CDS//exon       27773536//22575960
chr9:35704000-35704001(-) m6A CDS//exon       27773536//22575960
chr9:35704132-35704133(-) m6A CDS//exon       27773536
chr9:35704154-35704155(-) m6A CDS//exon       27773536
chr9:35704316-35704317(-) m6A exon//intron       -
chr9:35704322-35704323(-) m6A exon//intron       -
chr9:35704344-35704345(-) m6A CDS//exon       -
chr9:35704414-35704415(-) Y CDS//exon       26075521
chr9:35705653-35705654(-) m6A CDS//exon//intron       26404942
chr9:35705781-35705782(-) m6A CDS//exon//intron       26404942
chr9:35705796-35705797(-) m6A CDS//exon//intron       26404942
chr9:35705983-35705984(-) m6A CDS//exon//intron       26404942
chr9:35706043-35706044(-) m6A CDS//exon//intron       26404942
chr9:35707408-35707409(-) m6A CDS//exon//intron       22575960
chr9:35707735-35707736(-) m6A CDS//exon//intron       27773535
chr9:35707859-35707860(-) m6A CDS//exon       27773535
chr9:35708436-35708437(-) m6A CDS       22575960
chr9:35710630-35710631(-) m6A CDS       22575960
chr9:35713951-35713952(-) m6A CDS       26404942
chr9:35713967-35713968(-) m6A CDS       26404942
chr9:35714060-35714061(-) m6A CDS       26404942
chr9:35714278-35714279(-) m6A CDS       27773536
chr9:35714317-35714318(-) m6A CDS       27773536
chr9:35714836-35714837(-) m6A CDS       27773536//22575960
chr9:35716456-35716457(-) m6A CDS       22575960
chr9:35718896-35718897(-) m6A CDS       27773536
chr9:35719103-35719104(-) m6A CDS       27773536
chr9:35720447-35720448(-) m6A CDS       22575960
chr9:35720870-35720871(-) m6A CDS       27773535
chr9:35721693-35721694(-) m6A CDS       24981863//27773535//22575960
chr9:35721718-35721719(-) m6A CDS       24981863//27773535//22575960
chr9:35721780-35721781(-) m6A CDS       24981863//27773535//22575960
chr9:35722144-35722145(-) m6A CDS       27773535//22575960
chr9:35722909-35722910(-) m6A CDS       27773535
chr9:35724204-35724205(-) m6A CDS//exon       25456834//27773535//22575960//22608085
chr9:35724219-35724220(-) m6A CDS//exon       25456834//27773535//22575960//22608085
chr9:35724240-35724241(-) m6A CDS//exon       25456834//24981863//27773535//27371828//22575960//22608085
chr9:35724307-35724308(-) m6A CDS//exon       25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:35724318-35724319(-) m6A CDS//exon       25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:35724327-35724328(-) m6A CDS//exon       25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:35724599-35724600(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr9:35724610-35724611(-) Am CDS//exon       -
chr9:35724631-35724632(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr9:35724636-35724637(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr9:35724649-35724650(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr9:35724865-35724866(-) m6A CDS//exon       24981863//27773535//22608085
chr9:35724898-35724899(-) m6A CDS//exon       24981863//27773535//22608085
chr9:35724926-35724927(-) m6A CDS//exon       24981863//22608085
chr9:35724932-35724933(-) m6A CDS//exon       24981863//22608085
chr9:35725242-35725243(-) m6A CDS//exon       24981863//22608085
chr9:35732367-35732368(-) m6A 5'UTR       24284625//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-3-5p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973
Exosome K562 cells     24460325
TLN1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-3-5p
Interactor2: TLN1

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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