Basic Information:

  VIRBase ID:  

VHID00467400

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:  MIMAT0002193          PAX7:  NM_002584     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-3-5p	PAX7
miRBase Accession/Entrez ID	MIMAT0002193	5081
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HUP1//MYOSCO//PAX7B//RMS2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PAX7	chr1:19039456(+) A-I      intronic chr1:19031026(+) A-I      intronic chr1:19031034(+) A-I      intronic chr1:19015193(+) A-I      intronic chr1:19067912(+) A-I      intronic chr1:19015163(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PAX7	chr1:18958005-18958006(+) m1A 5'UTR       26863410 chr1:18962799-18962800(+) m6A CDS       24981863 chr1:18962833-18962834(+) m6A CDS       24981863 chr1:19018250-19018251(+) m6A CDS       24981863 chr1:19072899-19072900(+) m6A 3'UTR       24981863 chr1:19072919-19072920(+) m6A 3'UTR       24981863 chr1:19072943-19072944(+) m6A 3'UTR       24981863 chr1:19073064-19073065(+) m6A 3'UTR       24981863 chr1:19073084-19073085(+) m6A 3'UTR       24981863 chr1:19073091-19073092(+) m6A 3'UTR       24209618//24981863 chr1:19073096-19073097(+) m6A 3'UTR       24209618//24981863 chr1:19073169-19073170(+) m6A 3'UTR       24209618//24981863 chr1:19073253-19073254(+) m6A 3'UTR       24209618//24981863 chr1:19073269-19073270(+) m6A 3'UTR       24209618//24981863 chr1:19073312-19073313(+) m6A 3'UTR       24209618//24981863 chr1:19073338-19073339(+) m6A 3'UTR       24209618//24981863 chr1:19073376-19073377(+) m6A 3'UTR       24981863 chr1:19073394-19073395(+) m6A 3'UTR       24981863 chr1:19073402-19073403(+) m6A 3'UTR       24981863 chr1:19073420-19073421(+) m6A 3'UTR       24981863 chr1:19073477-19073478(+) m6A 3'UTR       24209618//24981863 chr1:19073500-19073501(+) m6A 3'UTR       24209618//24981863 chr1:19073512-19073513(+) m6A 3'UTR       24209618//24981863 chr1:19073583-19073584(+) m6A 3'UTR       24981863 chr1:19073588-19073589(+) m6A 3'UTR       24981863 chr1:19073713-19073714(+) m6A 3'UTR       24981863 chr1:19073756-19073757(+) m6A 3'UTR       24981863 chr1:19073793-19073794(+) m6A 3'UTR       24981863 chr1:19073799-19073800(+) m6A 3'UTR       24981863 chr1:19073815-19073816(+) m6A 3'UTR       24981863 chr1:19073840-19073841(+) m6A 3'UTR       24981863 chr1:19073880-19073881(+) m6A 3'UTR       24981863 chr1:19074123-19074124(+) m6A 3'UTR       24981863 chr1:19074573-19074574(+) m6A 3'UTR       24981863 chr1:19074592-19074593(+) m6A 3'UTR       24981863 chr1:19074599-19074600(+) m6A 3'UTR       24981863 chr1:19074695-19074696(+) m6A 3'UTR       24981863 chr1:19074884-19074885(+) m6A 3'UTR       24209618//24981863 chr1:19074939-19074940(+) m6A 3'UTR       24981863 chr1:19074945-19074946(+) m6A 3'UTR       24981863 chr1:19074988-19074989(+) m6A 3'UTR       24981863 chr1:19075258-19075259(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-3-5p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438 Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973 Exosome K562 cells     24460325
	PAX7	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-3-5p
Interactor2: PAX7

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg