Detail Information

Basic Information:


  VIRBase ID:  

VHID00467127

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:           HCFC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-3-5p HCFC1
miRBase
Accession/Entrez ID		 MIMAT0002193 3054
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - CFF//HCF//HCF-1//HCF1//HFC1//MRX3//PPP1R89//VCAF

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HCFC1
chrX:153227334(-) A-I      intronic
chrX:153231542(-) A-I      intronic
chrX:153231545(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HCFC1
chrX:153213319-153213320(-) m6A 3'UTR       24284625//27773535//27371828//27773536
chrX:153213365-153213366(-) m6A 3'UTR       24284625//27773535//27371828//27773536
chrX:153213424-153213425(-) m6A 3'UTR       24284625//27773535//27371828//27773536
chrX:153213529-153213530(-) m6A 3'UTR       22575960
chrX:153213604-153213605(-) m6A 3'UTR       -
chrX:153214493-153214494(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chrX:153214524-153214525(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chrX:153214745-153214746(-) m6A 3'UTR       27773535
chrX:153214762-153214763(-) m6A 3'UTR       27773535
chrX:153215054-153215055(-) m6A CDS       24284625//24981863//27773535
chrX:153215064-153215065(-) m6A CDS       24284625//24981863//27773535//22575960
chrX:153216888-153216889(-) m6A CDS       -
chrX:153216930-153216931(-) m6A CDS       24284625
chrX:153217590-153217591(-) m6A CDS       24284625//27371828//27773536//22575960
chrX:153218158-153218159(-) m6A CDS       24284625
chrX:153218288-153218289(-) m6A CDS       24284625//27773536
chrX:153218397-153218398(-) m6A CDS       24284625
chrX:153218447-153218448(-) m6A CDS//intron       24284625//27773535
chrX:153218519-153218520(-) m6A CDS//intron       24284625//27773535
chrX:153219160-153219161(-) m6A CDS       24284625//27773535//27371828
chrX:153219521-153219522(-) m6A CDS       24284625//27773535//27371828//22575960
chrX:153219579-153219580(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chrX:153219693-153219694(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chrX:153219765-153219766(-) m6A CDS       24284625//24209618//24981863//27371828//22575960
chrX:153219774-153219775(-) m6A CDS       24284625//24209618//24981863//27371828//22575960
chrX:153219879-153219880(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960
chrX:153219954-153219955(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:153219963-153219964(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:153220169-153220170(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chrX:153220338-153220339(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chrX:153220347-153220348(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chrX:153220518-153220519(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chrX:153220532-153220533(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chrX:153220605-153220606(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chrX:153220619-153220620(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chrX:153220693-153220694(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chrX:153220732-153220733(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chrX:153220782-153220783(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chrX:153220791-153220792(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chrX:153220885-153220886(-) m6A CDS       24284625//24209618//24981863//27773535//22575960
chrX:153221691-153221692(-) m6A CDS       24284625//22575960
chrX:153222190-153222191(-) m6A CDS       22575960
chrX:153222442-153222443(-) m6A CDS       24284625//22575960
chrX:153222806-153222807(-) m6A CDS       24284625//24981863//27773535//22575960
chrX:153222881-153222882(-) m6A CDS       24284625//24981863//27773535//22575960
chrX:153222959-153222960(-) m6A CDS       24284625//27773535//22575960
chrX:153223285-153223286(-) m6A CDS       24284625//27773535
chrX:153223295-153223296(-) m6A CDS       24284625//27773535
chrX:153223300-153223301(-) m6A CDS       24284625//27773535
chrX:153223648-153223649(-) m6A CDS       24284625
chrX:153223669-153223670(-) m6A CDS       24284625
chrX:153224087-153224088(-) m6A CDS       24284625
chrX:153224894-153224895(-) m6A CDS       24284625
chrX:153225258-153225259(-) m6A CDS       24284625
chrX:153225688-153225689(-) m6A CDS//exon       27773535//27371828
chrX:153229711-153229712(-) m6A CDS       22575960
chrX:153230034-153230035(-) m6A CDS       22575960
chrX:153230096-153230097(-) m6A CDS       22575960
chrX:153230140-153230141(-) m6A CDS       22575960
chrX:153236117-153236118(-) m6A CDS       27773536//22575960
chrX:153236293-153236294(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chrX:153236398-153236399(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chrX:153236475-153236476(-) Am 5'UTR       -
chrX:153236551-153236552(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:153236572-153236573(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:153236697-153236698(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chrX:153236713-153236714(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chrX:153236974-153236975(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:153236994-153236995(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:153237089-153237090(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:153237121-153237122(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-3-5p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973
Exosome K562 cells     24460325
HCFC1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-3-5p
Interactor2: HCFC1

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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