Basic Information:

  VIRBase ID:  

VHID00466788

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-3-5p:  MIMAT0002193          RHOG:  NM_001665     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-3-5p	RHOG
miRBase Accession/Entrez ID	MIMAT0002193	391
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARHG

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RHOG	chr11:3854202(-) A-I      intronic chr11:3851135(-) A-I      intronic chr11:3851088(-) A-I      intronic chr11:3851668(-) A-I      intronic chr11:3851159(-) A-I      intronic chr11:3851141(-) A-I      intronic chr11:3851115(-) A-I      intronic chr11:3851105(-) A-I      intronic chr11:3851150(-) A-I      intronic chr11:3851747(-) A-I      intronic chr11:3851634(-) A-I      intronic chr11:3851082(-) A-I      intronic chr11:3851145(-) A-I      intronic chr11:3851144(-) A-I      intronic chr11:3851155(-) A-I      intronic chr11:3850663(-) A-I      intronic chr11:3851790(-) A-I      5'UTR chr11:3850659(-) A-I      intronic chr11:3851702(-) A-I      intronic chr11:3851667(-) A-I      intronic chr11:3850674(-) A-I      intronic chr11:3850654(-) A-I      intronic chr11:3851006(-) A-I      intronic chr11:3855372(-) A-I      intronic chr11:3851688(-) A-I      intronic chr11:3851753(-) A-I      intronic chr11:3851773(-) A-I      5'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RHOG	chr11:3851773(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RHOG	chr11:3848223-3848224(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr11:3848253-3848254(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr11:3848545-3848546(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:3848585-3848586(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:3848705-3848706(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:3849015-3849016(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:3849145-3849146(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:3849198-3849199(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:3849207-3849208(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:3849213-3849214(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:3849301-3849302(-) Y CDS       26075521 chr11:3851765-3851766(-) m6A 5'UTR//intron       24284625//24209618//24981863//27371828//22575960//22608085 chr11:3859056-3859057(-) m6A 5'UTR//intron       27371828 chr11:3862061-3862062(-) m6A 5'UTR//intron       24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-3-5p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438 Exosome KSHV-infected lymphoma cell lines (BCBL-1|TY-1)     27611973 Exosome K562 cells     24460325
	RHOG	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-3-5p
Interactor2: RHOG

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg