Basic Information:

  VIRBase ID:  

VHID00465528

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-4-3p:  MIMAT0002192          OCEL1:  NM_024578     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-4-3p	OCEL1
miRBase Accession/Entrez ID	MIMAT0002192	79629
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FWP009//S863-9

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	OCEL1	chr19:17339221(+) A-I      intronic chr19:17338421(+) A-I      intronic chr19:17338353(+) A-I      intronic chr19:17338412(+) A-I      intronic chr19:17339295(+) A-I      intronic chr19:17339457(+) A-I      intronic chr19:17338350(+) A-I      intronic chr19:17339357(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	OCEL1	chr19:17337121-17337122(+) m6A CDS//exon       24284625//25456834//24981863 chr19:17337512-17337513(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863 chr19:17337533-17337534(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863 chr19:17337552-17337553(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863 chr19:17337572-17337573(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863 chr19:17337624-17337625(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr19:17337749-17337750(+) m6A exon//intron       24284625//24981863 chr19:17337783-17337784(+) m6A exon//intron       24284625//24209618//24981863 chr19:17337810-17337811(+) m6A CDS//exon       24284625//24209618//24981863 chr19:17337832-17337833(+) m6A CDS//exon       24284625//24209618//24981863 chr19:17337870-17337871(+) m6A CDS//exon       24284625//24981863 chr19:17337886-17337887(+) m6A CDS//exon       24284625//24981863 chr19:17338707-17338708(+) m6A 3'UTR//CDS//exon//intron       24284625 chr19:17339158-17339159(+) m6A exon//intron       24981863 chr19:17339444-17339445(+) m6A 3'UTR//exon//intron       - chr19:17339575-17339576(+) m6A 3'UTR//exon//intron       24284625//25456834 chr19:17339587-17339588(+) m6A 3'UTR//exon//intron       24284625//25456834 chr19:17339627-17339628(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863 chr19:17339661-17339662(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863 chr19:17339677-17339678(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834 chr19:17339708-17339709(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834 chr19:17339871-17339872(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863 chr19:17339912-17339913(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863 chr19:17339951-17339952(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr19:17340010-17340011(+) m6A 3'UTR//exon       24284625 chr19:17340021-17340022(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	OCEL1	Exosome Blood     - Membrane K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	kshv-miR-K12-4-3p	Panobinostat       6918837 Nilotinib       644241 Irinotecan       60838 Topotecan       60700 l-685,458       5479543 Palbociclib       5330286 Dovitinib       135398510 Crizotinib       11626560 Nvp-aew541       11476171 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-4-3p
Interactor2: OCEL1

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg