Detail Information

Basic Information:


  VIRBase ID:  

VHID00465439

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-4-3p:           CSMD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-4-3p CSMD1
miRBase
Accession/Entrez ID		 MIMAT0002192 64478
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - PPP1R24

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CSMD1
chr8:2963645(-) A-I      intronic
chr8:2962367(-) A-I      intronic
chr8:2959439(-) A-I      intronic
chr8:2950932(-) A-I      intronic
chr8:2950910(-) A-I      intronic
chr8:2941962(-) A-I      intronic
chr8:2941959(-) A-I      intronic
chr8:2941395(-) A-I      intronic
chr8:3084741(-) A-I      intronic
chr8:3085382(-) A-I      intronic
chr8:3093637(-) A-I      intronic
chr8:3093643(-) A-I      intronic
chr8:3093645(-) A-I      intronic
chr8:3828443(-) A-I      intronic
chr8:3989400(-) A-I      intronic
chr8:2941880(-) A-I      intronic
chr8:3989404(-) A-I      intronic
chr8:3866313(-) A-I      intronic
chr8:4575778(-) A-I      intronic
chr8:4575765(-) A-I      intronic
chr8:4575749(-) A-I      intronic
chr8:3104126(-) A-I      intronic
chr8:3104132(-) A-I      intronic
chr8:4575747(-) A-I      intronic
chr8:4575740(-) A-I      intronic
chr8:4575732(-) A-I      intronic
chr8:4575726(-) A-I      intronic
chr8:4571100(-) A-I      intronic
chr8:4571088(-) A-I      intronic
chr8:4571072(-) A-I      intronic
chr8:4571056(-) A-I      intronic
chr8:4061419(-) A-I      intronic
chr8:4061438(-) A-I      intronic
chr8:4006562(-) A-I      intronic
chr8:3695837(-) A-I      intronic
chr8:4783116(-) A-I      intronic
chr8:4765117(-) A-I      intronic
chr8:3748839(-) A-I      intronic
chr8:4409224(-) A-I      intronic
chr8:4770350(-) A-I      intronic
chr8:4218220(-) A-I      intronic
chr8:4218173(-) A-I      intronic
chr8:4451818(-) A-I      intronic
chr8:4409225(-) A-I      intronic
chr8:4435745(-) A-I      intronic
chr8:4435768(-) A-I      intronic
chr8:4451788(-) A-I      intronic
chr8:3678713(-) A-I      intronic
chr8:3748844(-) A-I      intronic
chr8:4451791(-) A-I      intronic
chr8:2963673(-) A-I      intronic
chr8:4250636(-) A-I      intronic
chr8:4062266(-) A-I      intronic
chr8:2963682(-) A-I      intronic
chr8:3288326(-) A-I      intronic
chr8:4062253(-) A-I      intronic
chr8:4062249(-) A-I      intronic
chr8:3282472(-) A-I      intronic
chr8:3273665(-) A-I      intronic
chr8:3273659(-) A-I      intronic
chr8:3989396(-) A-I      intronic
chr8:4062245(-) A-I      intronic
chr8:4062224(-) A-I      intronic
chr8:4061379(-) A-I      intronic
chr8:3989413(-) A-I      intronic
chr8:3866209(-) A-I      intronic
chr8:3828438(-) A-I      intronic
chr8:3828446(-) A-I      intronic
chr8:3093604(-) A-I      intronic
chr8:3093613(-) A-I      intronic
chr8:3093620(-) A-I      intronic
chr8:3093621(-) A-I      intronic
chr8:3093635(-) A-I      intronic
chr8:3093636(-) A-I      intronic
chr8:3986470(-) A-I      intronic
chr8:3708195(-) A-I      intronic
chr8:3828500(-) A-I      intronic
chr8:3467882(-) A-I      intronic
chr8:3998143(-) A-I      intronic
chr8:3684401(-) A-I      intronic
chr8:4436093(-) A-I      intronic
chr8:2959353(-) A-I      intronic
chr8:3990532(-) A-I      intronic
chr8:3290287(-) A-I      intronic
chr8:4022964(-) A-I      intronic
chr8:4298688(-) A-I      intronic
chr8:4250603(-) A-I      intronic
chr8:4411909(-) A-I      intronic
chr8:4392555(-) A-I      intronic
chr8:4823818(-) A-I      intronic
chr8:4392357(-) A-I      intronic
chr8:2994018(-) A-I      intronic
chr8:4565152(-) A-I      intronic
chr8:3106840(-) A-I      intronic
chr8:4458607(-) A-I      intronic
chr8:4836348(-) A-I      intronic
chr8:3507706(-) A-I      intronic
chr8:3613633(-) A-I      intronic
chr8:3080090(-) A-I      intronic
chr8:4298275(-) A-I      intronic
chr8:4652970(-) A-I      intronic
chr8:4187976(-) A-I      intronic
chr8:4763097(-) A-I      intronic
chr8:2961394(-) A-I      intronic
chr8:2941465(-) A-I      intronic
chr8:2997614(-) A-I      intronic
chr8:2941355(-) A-I      intronic
chr8:3023174(-) A-I      intronic
chr8:3826657(-) A-I      intronic
chr8:4837366(-) A-I      intronic
chr8:4423919(-) A-I      intronic
chr8:4188098(-) A-I      intronic
chr8:4799252(-) A-I      intronic
chr8:4765248(-) A-I      intronic
chr8:3826625(-) A-I      intronic
chr8:4420680(-) A-I      intronic
chr8:4219233(-) A-I      intronic
chr8:4820859(-) A-I      intronic
chr8:4395921(-) A-I      intronic
chr8:2941801(-) A-I      intronic
chr8:4612123(-) A-I      intronic
chr8:3695840(-) A-I      intronic
chr8:3997908(-) A-I      intronic
chr8:4017290(-) A-I      intronic
chr8:4411787(-) A-I      intronic
chr8:3785065(-) A-I      intronic
chr8:4416402(-) A-I      intronic
chr8:4023124(-) A-I      intronic
chr8:4819992(-) A-I      intronic
chr8:4250368(-) A-I      intronic
chr8:4186980(-) A-I      intronic
chr8:4823669(-) A-I      intronic
chr8:2959461(-) A-I      intronic
chr8:3863863(-) A-I      intronic
chr8:4141589(-) A-I      intronic
chr8:4657789(-) A-I      intronic
chr8:3826766(-) A-I      intronic
chr8:4800966(-) A-I      intronic
chr8:2941811(-) A-I      intronic
chr8:3573167(-) A-I      intronic
chr8:4218289(-) A-I      intronic
chr8:4061511(-) A-I      intronic
chr8:3805523(-) A-I      intronic
chr8:3811986(-) A-I      intronic
chr8:4673184(-) A-I      intronic
chr8:3094872(-) A-I      intronic
chr8:3844495(-) A-I      intronic
chr8:2850454(-) A-I      intronic
chr8:4794652(-) A-I      intronic
chr8:4565326(-) A-I      intronic
chr8:3805562(-) A-I      intronic
chr8:4783207(-) A-I      intronic
chr8:4823698(-) A-I      intronic
chr8:3839604(-) A-I      intronic
chr8:4017315(-) A-I      intronic
chr8:4782000(-) A-I      intronic
chr8:4821984(-) A-I      intronic
chr8:4526162(-) A-I      intronic
chr8:4598269(-) A-I      intronic
chr8:3749167(-) A-I      intronic
chr8:3612244(-) A-I      intronic
chr8:3864488(-) A-I      intronic
chr8:4253791(-) A-I      intronic
chr8:3785078(-) A-I      intronic
chr8:3840919(-) A-I      intronic
chr8:4820915(-) A-I      intronic
chr8:2941320(-) A-I      intronic
chr8:3093618(-) A-I      intronic
chr8:3126016(-) A-I      intronic
chr8:4170313(-) A-I      intronic
chr8:4799372(-) A-I      intronic
chr8:4764217(-) A-I      intronic
chr8:3612150(-) A-I      intronic
chr8:3839504(-) A-I      intronic
chr8:4612493(-) A-I      intronic
chr8:4392460(-) A-I      intronic
chr8:4565744(-) A-I      intronic
chr8:3936332(-) A-I      intronic
chr8:4821869(-) A-I      intronic
chr8:4763085(-) A-I      intronic
chr8:4799275(-) A-I      intronic
chr8:4565346(-) A-I      intronic
chr8:4837334(-) A-I      intronic
chr8:3271410(-) A-I      intronic
chr8:4437023(-) A-I      intronic
chr8:3784944(-) A-I      intronic
chr8:4089976(-) A-I      intronic
chr8:4395902(-) A-I      intronic
chr8:3094867(-) A-I      intronic
chr8:3707999(-) A-I      intronic
chr8:4820850(-) A-I      intronic
chr8:3593980(-) A-I      intronic
chr8:3550068(-) A-I      intronic
chr8:4489995(-) A-I      intronic
chr8:3707944(-) A-I      intronic
chr8:4004245(-) A-I      intronic
chr8:4298689(-) A-I      intronic
chr8:4449938(-) A-I      intronic
chr8:3338578(-) A-I      intronic
chr8:4598244(-) A-I      intronic
chr8:4187028(-) A-I      intronic
chr8:4298456(-) A-I      intronic
chr8:4409326(-) A-I      intronic
chr8:2850451(-) A-I      intronic
chr8:4799339(-) A-I      intronic
chr8:3839571(-) A-I      intronic
chr8:4449977(-) A-I      intronic
chr8:4298843(-) A-I      intronic
chr8:4387707(-) A-I      intronic
chr8:3094825(-) A-I      intronic
chr8:3679300(-) A-I      intronic
chr8:4706199(-) A-I      intronic
chr8:2963657(-) A-I      intronic
chr8:3271489(-) A-I      intronic
chr8:3785075(-) A-I      intronic
chr8:4187051(-) A-I      intronic
chr8:4781988(-) A-I      intronic
chr8:4304364(-) A-I      intronic
chr8:2962358(-) A-I      intronic
chr8:4770538(-) A-I      intronic
chr8:2816826(-) A-I      intronic
chr8:3864517(-) A-I      intronic
chr8:4250595(-) A-I      intronic
chr8:4082552(-) A-I      intronic
chr8:4387575(-) A-I      intronic
chr8:4823844(-) A-I      intronic
chr8:2898203(-) A-I      intronic
chr8:4783141(-) A-I      intronic
chr8:4435718(-) A-I      intronic
chr8:3829531(-) A-I      intronic
chr8:2941346(-) A-I      intronic
chr8:4387565(-) A-I      intronic
chr8:3998078(-) A-I      intronic
chr8:4819932(-) A-I      intronic
chr8:4538239(-) A-I      intronic
chr8:4377017(-) A-I      intronic
chr8:4837356(-) A-I      intronic
chr8:3613634(-) A-I      intronic
chr8:4010205(-) A-I      intronic
chr8:4256044(-) A-I      intronic
chr8:4657871(-) A-I      intronic
chr8:2957747(-) A-I      intronic
chr8:4250770(-) A-I      intronic
chr8:3078290(-) A-I      intronic
chr8:4831597(-) A-I      intronic
chr8:4242545(-) A-I      intronic
chr8:3560096(-) A-I      intronic
chr8:3820511(-) A-I      intronic
chr8:4416268(-) A-I      intronic
chr8:4141762(-) A-I      intronic
chr8:4800991(-) A-I      intronic
chr8:3649217(-) A-I      intronic
chr8:2994060(-) A-I      intronic
chr8:4799324(-) A-I      intronic
chr8:4416223(-) A-I      intronic
chr8:2997573(-) A-I      intronic
chr8:4565166(-) A-I      intronic
chr8:4250699(-) A-I      intronic
chr8:3707584(-) A-I      intronic
chr8:4831676(-) A-I      intronic
chr8:2991551(-) A-I      intronic
chr8:4799245(-) A-I      intronic
chr8:4673096(-) A-I      intronic
chr8:3805516(-) A-I      intronic
chr8:4819896(-) A-I      intronic
chr8:4571062(-) A-I      intronic
chr8:4821929(-) A-I      intronic
chr8:4180299(-) A-I      intronic
chr8:2933374(-) A-I      intronic
chr8:3826607(-) A-I      intronic
chr8:4304168(-) A-I      intronic
chr8:4489990(-) A-I      intronic
chr8:4218272(-) A-I      intronic
chr8:4783319(-) A-I      intronic
chr8:4298713(-) A-I      intronic
chr8:3105605(-) A-I      intronic
chr8:2991452(-) A-I      intronic
chr8:4783253(-) A-I      intronic
chr8:3995704(-) A-I      intronic
chr8:4248309(-) A-I      intronic
chr8:3839437(-) A-I      intronic
chr8:4783233(-) A-I      intronic
chr8:2840883(-) A-I      intronic
chr8:3138797(-) A-I      intronic
chr8:2914091(-) A-I      intronic
chr8:4821866(-) A-I      intronic
chr8:3675096(-) A-I      intronic
chr8:4411694(-) A-I      intronic
chr8:3826651(-) A-I      intronic
chr8:4396082(-) A-I      intronic
chr8:4783341(-) A-I      intronic
chr8:4187899(-) A-I      intronic
chr8:4392488(-) A-I      intronic
chr8:4396043(-) A-I      intronic
chr8:4250576(-) A-I      intronic
chr8:4657831(-) A-I      intronic
chr8:4411823(-) A-I      intronic
chr8:4783336(-) A-I      intronic
chr8:4599444(-) A-I      intronic
chr8:4409267(-) A-I      intronic
chr8:2997549(-) A-I      intronic
chr8:4446144(-) A-I      intronic
chr8:4392450(-) A-I      intronic
chr8:2842044(-) A-I      intronic
chr8:4813089(-) A-I      intronic
chr8:4437062(-) A-I      intronic
chr8:3935934(-) A-I      intronic
chr8:4219394(-) A-I      intronic
chr8:3674943(-) A-I      intronic
chr8:3078098(-) A-I      intronic
chr8:4538240(-) A-I      intronic
chr8:4392423(-) A-I      intronic
chr8:4565407(-) A-I      intronic
chr8:4399025(-) A-I      intronic
chr8:3273762(-) A-I      intronic
chr8:4615369(-) A-I      intronic
chr8:2941342(-) A-I      intronic
chr8:3024724(-) A-I      intronic
chr8:3990730(-) A-I      intronic
chr8:2951916(-) A-I      intronic
chr8:4058272(-) A-I      intronic
chr8:3578380(-) A-I      intronic
chr8:4186978(-) A-I      intronic
chr8:4771934(-) A-I      intronic
chr8:4023004(-) A-I      intronic
chr8:4180424(-) A-I      intronic
chr8:4023197(-) A-I      intronic
chr8:3649223(-) A-I      intronic
chr8:4565376(-) A-I      intronic
chr8:3840925(-) A-I      intronic
chr8:3784323(-) A-I      intronic
chr8:2991445(-) A-I      intronic
chr8:4771842(-) A-I      intronic
chr8:3370322(-) A-I      intronic
chr8:4411834(-) A-I      intronic
chr8:4303791(-) A-I      intronic
chr8:4765258(-) A-I      intronic
chr8:4838181(-) A-I      intronic
chr8:2993990(-) A-I      intronic
chr8:4022282(-) A-I      intronic
chr8:3826634(-) A-I      intronic
chr8:2933045(-) A-I      intronic
chr8:4446060(-) A-I      intronic
chr8:4831653(-) A-I      intronic
chr8:2816803(-) A-I      intronic
chr8:4055399(-) A-I      intronic
chr8:2994059(-) A-I      intronic
chr8:4821779(-) A-I      intronic
chr8:3679192(-) A-I      intronic
chr8:4837438(-) A-I      intronic
chr8:4437163(-) A-I      intronic
chr8:3936059(-) A-I      intronic
chr8:4436125(-) A-I      intronic
chr8:3598635(-) A-I      intronic
chr8:3864565(-) A-I      intronic
chr8:4800828(-) A-I      intronic
chr8:2991440(-) A-I      intronic
chr8:4571087(-) A-I      intronic
chr8:3936058(-) A-I      intronic
chr8:4782062(-) A-I      intronic
chr8:4673774(-) A-I      intronic
chr8:3863883(-) A-I      intronic
chr8:4250310(-) A-I      intronic
chr8:4291615(-) A-I      intronic
chr8:4218114(-) A-I      intronic
chr8:4820860(-) A-I      intronic
chr8:4490907(-) A-I      intronic
chr8:4838174(-) A-I      intronic
chr8:4298692(-) A-I      intronic
chr8:4248335(-) A-I      intronic
chr8:3989423(-) A-I      intronic
chr8:4770472(-) A-I      intronic
chr8:4304143(-) A-I      intronic
chr8:4187990(-) A-I      intronic
chr8:4298411(-) A-I      intronic
chr8:4794489(-) A-I      intronic
chr8:4396002(-) A-I      intronic
chr8:4349750(-) A-I      intronic
chr8:2941783(-) A-I      intronic
chr8:4770584(-) A-I      intronic
chr8:4437049(-) A-I      intronic
chr8:4253799(-) A-I      intronic
chr8:4304212(-) A-I      intronic
chr8:3998095(-) A-I      intronic
chr8:3104161(-) A-I      intronic
chr8:4436082(-) A-I      intronic
chr8:4823838(-) A-I      intronic
chr8:3844496(-) A-I      intronic
chr8:4218150(-) A-I      intronic
chr8:4260434(-) A-I      intronic
chr8:4692357(-) A-I      intronic
chr8:4799394(-) A-I      intronic
chr8:4489912(-) A-I      intronic
chr8:4571567(-) A-I      intronic
chr8:4253913(-) A-I      intronic
chr8:3518058(-) A-I      intronic
chr8:4446119(-) A-I      intronic
chr8:3679218(-) A-I      intronic
chr8:4451842(-) A-I      intronic
chr8:3123871(-) A-I      intronic
chr8:4489833(-) A-I      intronic
chr8:3120798(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CSMD1
chr8:2840915(-) T-C intron -    22484847
chr8:4219290(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CSMD1
chr8:2795659-2795660(-) m6A 3'UTR       24209618
chr8:2795669-2795670(-) m6A 3'UTR       24209618
chr8:2795800-2795801(-) m6A 3'UTR       24284625
chr8:2795840-2795841(-) m6A 3'UTR       24284625
chr8:2795921-2795922(-) m6A 3'UTR       24284625
chr8:2796059-2796060(-) m6A 3'UTR       24284625//24209618
chr8:2796086-2796087(-) m6A 3'UTR       24284625//24209618
chr8:2796128-2796129(-) m6A CDS       24284625//24209618
chr8:2796169-2796170(-) m6A CDS       24284625//24209618
chr8:2796176-2796177(-) m6A CDS       24284625//24209618
chr8:2796194-2796195(-) m6A CDS       24284625//24209618
chr8:2796211-2796212(-) m6A CDS       24284625//24209618
chr8:2796221-2796222(-) m6A CDS       24284625//24209618
chr8:3038711-3038712(-) m6A CDS//exon       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CSMD1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug kshv-miR-K12-4-3p
Panobinostat       6918837
Nilotinib       644241
Irinotecan       60838
Topotecan       60700
l-685,458       5479543
Palbociclib       5330286
Dovitinib       135398510
Crizotinib       11626560
Nvp-aew541       11476171
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-4-3p
Interactor2: CSMD1

Evidence Support:


Prediction-Evidence cRep//miRanda
Support Database RepTar//VmiReg

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