Basic Information:

  VIRBase ID:  

VHID00465231

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6787

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-4-3p:  MIMAT0002192          FEM1C:  NM_020177     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-4-3p	FEM1C
miRBase Accession/Entrez ID	MIMAT0002192	56929
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EUROIMAGE686608//EUROIMAGE783647//FEM1A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FEM1C	chr5:114856756-114856757(-) m6A 3'UTR       27773535 chr5:114856829-114856830(-) m6A 3'UTR       27773535 chr5:114856862-114856863(-) m6A 3'UTR       27773535 chr5:114858758-114858759(-) m6A 3'UTR       27773535 chr5:114859517-114859518(-) m6A 3'UTR       27773535 chr5:114859526-114859527(-) m6A 3'UTR       27773535 chr5:114859546-114859547(-) m6A 3'UTR       27773535 chr5:114860027-114860028(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr5:114860175-114860176(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860185-114860186(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860233-114860234(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:114860284-114860285(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:114860386-114860387(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860456-114860457(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860473-114860474(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860478-114860479(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860577-114860578(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860694-114860695(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114860809-114860810(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860950-114860951(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:114860987-114860988(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861000-114861001(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861017-114861018(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861037-114861038(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861088-114861089(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861134-114861135(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861143-114861144(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861271-114861272(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114878710-114878711(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878753-114878754(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878779-114878780(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878908-114878909(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878952-114878953(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114879075-114879076(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879145-114879146(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879177-114879178(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879195-114879196(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879243-114879244(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879284-114879285(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879336-114879337(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114880234-114880235(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22608085 chr5:114880267-114880268(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536 chr5:114880294-114880295(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536 chr5:114880385-114880386(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FEM1C	Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     - Ribosome-free cytosol Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	kshv-miR-K12-4-3p	Panobinostat       6918837 Nilotinib       644241 Irinotecan       60838 Topotecan       60700 l-685,458       5479543 Palbociclib       5330286 Dovitinib       135398510 Crizotinib       11626560 Nvp-aew541       11476171 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-4-3p
Interactor2: FEM1C

Evidence Support:

Weak-Evidence	Microarray//PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Rep//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

[1]PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

[2]PMID	22174674	Target region	None
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	DG-75 cells	Interactor2 expression	Downregulation
Description	As KSHV putative direct targets we extracted transcripts that were significantly down-regulated significantly in the replicate experiments, and which contained at least one seed-match to one of the KSHV miRNAs. We identified 704 putative direct targets in DG-75 cells (Figure 3B), and 980 putative direct targets in EA.hy926 cells (Figure 3C). A complete list of putative direct targets can be found in Dataset S2 for DG-75 cells and in Dataset S3 for EA.hy926 cells. The overlap between the two datasets contained 153 putative direct targets (Dataset S4).