Basic Information:

  VIRBase ID:  

VHID00462700

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-4-5p:  MIMAT0002191          C16orf87:  NR_145835     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-4-5p	C16orf87
miRBase Accession/Entrez ID	MIMAT0002191	388272
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C16orf87	chr16:46853778(-) A-I      intronic chr16:46843197(-) A-I      intronic chr16:46845271(-) A-I      intronic chr16:46845289(-) A-I      intronic chr16:46852061(-) A-I      intronic chr16:46841150(-) A-I      intronic chr16:46853724(-) A-I      intronic chr16:46841260(-) A-I      intronic chr16:46853223(-) A-I      intronic chr16:46840275(-) A-I      intronic chr16:46841184(-) A-I      intronic chr16:46840350(-) A-I      intronic chr16:46853248(-) A-I      intronic chr16:46853770(-) A-I      intronic chr16:46840200(-) A-I      intronic chr16:46840376(-) A-I      intronic chr16:46851340(-) A-I      intronic chr16:46840438(-) A-I      intronic chr16:46853300(-) A-I      intronic chr16:46841315(-) A-I      intronic chr16:46853799(-) A-I      intronic chr16:46840399(-) A-I      intronic chr16:46841185(-) A-I      intronic chr16:46840443(-) A-I      intronic chr16:46840351(-) A-I      intronic chr16:46853277(-) A-I      intronic chr16:46861985(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C16orf87	chr16:46835794-46835795(-) m6A 3'UTR       27773535 chr16:46835959-46835960(-) m6A 3'UTR       27773535 chr16:46835973-46835974(-) m6A 3'UTR       27773535 chr16:46836339-46836340(-) m6A 3'UTR       27773535 chr16:46836533-46836534(-) m6A 3'UTR       24981863//27773535//22608085 chr16:46836598-46836599(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085 chr16:46836689-46836690(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr16:46836795-46836796(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr16:46836805-46836806(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr16:46836838-46836839(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr16:46836875-46836876(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr16:46836977-46836978(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr16:46841940-46841941(-) m6A CDS//intron       24981863//27773535//22608085 chr16:46842002-46842003(-) m6A CDS//intron       24981863//27773535//22608085 chr16:46842022-46842023(-) m6A CDS//intron       24981863//27773535//22608085 chr16:46842035-46842036(-) m6A CDS//intron       24981863//27773535//22608085 chr16:46843530-46843531(-) m6A CDS//exon//intron       24981863//27773535//22608085 chr16:46843554-46843555(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:46843612-46843613(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:46843667-46843668(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:46843693-46843694(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:46858325-46858326(-) m6A CDS//exon       24981863//27773535//22608085 chr16:46858340-46858341(-) m6A CDS//exon       24981863//27773535 chr16:46864588-46864589(-) m6A exon//intron       27773535 chr16:46865143-46865144(-) m6A 5'UTR       24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C16orf87	Chromatin K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-4-5p
Interactor2: C16orf87

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg