Basic Information:

  VIRBase ID:  

VHID00462244

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-4-5p:  MIMAT0002191          YRDC:  NM_024640     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-4-5p	YRDC
miRBase Accession/Entrez ID	MIMAT0002191	79693
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DRIP3//IRIP//SUA5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	YRDC	chr1:38272031(-) A-I      intronic chr1:38272090(-) A-I      intronic chr1:38272043(-) A-I      intronic chr1:38272087(-) A-I      intronic chr1:38272070(-) A-I      intronic chr1:38272056(-) A-I      intronic chr1:38272052(-) A-I      intronic chr1:38270793(-) A-I      intronic chr1:38270694(-) A-I      intronic chr1:38270850(-) A-I      intronic chr1:38271951(-) A-I      intronic chr1:38270692(-) A-I      intronic chr1:38270693(-) A-I      intronic chr1:38272155(-) A-I      intronic chr1:38270816(-) A-I      intronic chr1:38271969(-) A-I      intronic chr1:38270579(-) A-I      intronic chr1:38270806(-) A-I      intronic chr1:38270731(-) A-I      intronic chr1:38272037(-) A-I      intronic chr1:38272042(-) A-I      intronic chr1:38270790(-) A-I      intronic chr1:38270869(-) A-I      intronic chr1:38270680(-) A-I      intronic chr1:38272033(-) A-I      intronic chr1:38270918(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	YRDC	chr1:38272033(-) A-I intron -    22327324 chr1:38270790(-) A-G intron -    22484847 chr1:38270869(-) A-G intron -    22484847 chr1:38272033(-) A-G intron -    22484847 chr1:38272037(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	YRDC	chr1:38268631-38268632(-) m6A 3'UTR       27773535 chr1:38268665-38268666(-) m6A 3'UTR       27773535 chr1:38268689-38268690(-) m6A 3'UTR       27773535 chr1:38268992-38268993(-) Am 3'UTR       - chr1:38273653-38273654(-) m6A CDS       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	YRDC	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-4-5p
Interactor2: YRDC

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg