Detail Information

Basic Information:


  VIRBase ID:  

VHID00461155

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-4-5p:           SMAD9:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-4-5p SMAD9
miRBase
Accession/Entrez ID		 MIMAT0002191 4093
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - MADH6//MADH9//PPH2//SMAD8//SMAD8/9//SMAD8A//SMAD8B

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SMAD9
chr13:37442632(-) A-I      intronic
chr13:37481608(-) A-I      intronic
chr13:37477402(-) A-I      intronic
chr13:37433011(-) A-I      intronic
chr13:37481824(-) A-I      intronic
chr13:37433050(-) A-I      intronic
chr13:37442631(-) A-I      intronic
chr13:37428213(-) A-I      intronic
chr13:37442753(-) A-I      intronic
chr13:37443479(-) A-I      intronic
chr13:37443492(-) A-I      intronic
chr13:37481612(-) A-I      intronic
chr13:37481810(-) A-I      intronic
chr13:37443857(-) A-I      intronic
chr13:37433854(-) A-I      intronic
chr13:37477401(-) A-I      intronic
chr13:37443844(-) A-I      intronic
chr13:37420168(-) A-I      3'UTR
chr13:37420377(-) A-I      3'UTR
chr13:37420194(-) A-I      3'UTR
chr13:37420169(-) A-I      3'UTR
chr13:37420237(-) A-I      3'UTR
chr13:37420363(-) A-I      3'UTR
chr13:37420251(-) A-I      3'UTR
chr13:37420229(-) A-I      3'UTR
chr13:37420579(-) A-I      3'UTR
chr13:37420218(-) A-I      3'UTR
chr13:37420463(-) A-I      3'UTR
chr13:37420512(-) A-I      3'UTR
chr13:37420226(-) A-I      3'UTR
chr13:37420376(-) A-I      3'UTR
chr13:37427179(-) A-I      intronic
chr13:37481765(-) A-I      intronic
chr13:37429172(-) A-I      intronic
chr13:37433853(-) A-I      intronic
chr13:37427300(-) A-I      intronic
chr13:37477370(-) A-I      intronic
chr13:37424654(-) A-I      intronic
chr13:37424686(-) A-I      intronic
chr13:37427340(-) A-I      intronic
chr13:37446397(-) A-I      intronic
chr13:37424614(-) A-I      intronic
chr13:37443527(-) A-I      intronic
chr13:37424653(-) A-I      intronic
chr13:37443452(-) A-I      intronic
chr13:37443523(-) A-I      intronic
chr13:37429199(-) A-I      intronic
chr13:37443854(-) A-I      intronic
chr13:37428629(-) A-I      intronic
chr13:37442834(-) A-I      intronic
chr13:37427339(-) A-I      intronic
chr13:37475953(-) A-I      intronic
chr13:37481549(-) A-I      intronic
chr13:37427167(-) A-I      intronic
chr13:37427259(-) A-I      intronic
chr13:37461587(-) A-I      intronic
chr13:37481760(-) A-I      intronic
chr13:37427237(-) A-I      intronic
chr13:37420361(-) A-I      3'UTR
chr13:37420375(-) A-I      3'UTR
chr13:37420157(-) A-I      3'UTR
chr13:37420235(-) A-I      3'UTR
chr13:37420212(-) A-I      3'UTR
chr13:37420385(-) A-I      3'UTR
chr13:37420154(-) A-I      3'UTR
chr13:37420144(-) A-I      3'UTR
chr13:37420549(-) A-I      3'UTR
chr13:37420189(-) A-I      3'UTR
chr13:37420213(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SMAD9
chr13:37421610-37421611(-) m6A 3'UTR       27773535
chr13:37421631-37421632(-) m6A 3'UTR       27773535
chr13:37421745-37421746(-) m6A 3'UTR       27773535//22608085
chr13:37421762-37421763(-) m6A 3'UTR       27773535//22608085
chr13:37421909-37421910(-) m6A 3'UTR       22608085
chr13:37421974-37421975(-) m6A 3'UTR       24284625//22608085
chr13:37422020-37422021(-) m6A 3'UTR       22608085
chr13:37422042-37422043(-) m6A 3'UTR       22608085
chr13:37422072-37422073(-) m6A 3'UTR       22608085
chr13:37422078-37422079(-) m6A 3'UTR       22608085
chr13:37422147-37422148(-) m6A 3'UTR       24981863//22608085
chr13:37422192-37422193(-) m6A 3'UTR       24981863//27773535//22608085
chr13:37422219-37422220(-) m6A 3'UTR       27773535//22608085
chr13:37422286-37422287(-) m6A 3'UTR       27773535//22608085
chr13:37422381-37422382(-) m6A 3'UTR       27773535
chr13:37422394-37422395(-) m6A 3'UTR       27773535
chr13:37422454-37422455(-) m6A 3'UTR       27773535
chr13:37422462-37422463(-) m6A 3'UTR       27773535
chr13:37422514-37422515(-) m6A 3'UTR       24981863//27773535
chr13:37422569-37422570(-) m6A 3'UTR       27773535//22608085
chr13:37422612-37422613(-) m6A 3'UTR       24284625//27773535//22608085
chr13:37439686-37439687(-) m6A CDS       27773535
chr13:37439711-37439712(-) m6A CDS       27773535
chr13:37439717-37439718(-) m6A CDS       27773535
chr13:37439734-37439735(-) m6A CDS       27773535
chr13:37439750-37439751(-) m6A CDS       -
chr13:37439814-37439815(-) m6A CDS       -
chr13:37441475-37441476(-) m6A CDS//intron       27773535
chr13:37447026-37447027(-) m6A CDS       24284625//27773535
chr13:37453420-37453421(-) m6A CDS       24284625//27773535
chr13:37453710-37453711(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr13:37453766-37453767(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SMAD9
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human fibrosarcoma cells (HT1080)     25753659
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-4-5p
Interactor2: SMAD9

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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