Detail Information

Basic Information:


  VIRBase ID:  

VHID00458950

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-3p:           UBOX5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-3p UBOX5
miRBase
Accession/Entrez ID		 MIMAT0002190 22888
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - hUIP5//RNF37//UBCE7IP5//UIP5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UBOX5
chr20:3096614(-) A-I      intronic
chr20:3118029(-) A-I      intronic
chr20:3096570(-) A-I      intronic
chr20:3096579(-) A-I      intronic
chr20:3096618(-) A-I      intronic
chr20:3096627(-) A-I      intronic
chr20:3096682(-) A-I      intronic
chr20:3100461(-) A-I      intronic
chr20:3089387(-) A-I      3'UTR
chr20:3089413(-) A-I      3'UTR
chr20:3089430(-) A-I      3'UTR
chr20:3089435(-) A-I      3'UTR
chr20:3101113(-) A-I      intronic
chr20:3101170(-) A-I      intronic
chr20:3089441(-) A-I      3'UTR
chr20:3089527(-) A-I      3'UTR
chr20:3118075(-) A-I      intronic
chr20:3118083(-) A-I      intronic
chr20:3118081(-) A-I      intronic
chr20:3118082(-) A-I      intronic
chr20:3096592(-) A-I      intronic
chr20:3096613(-) A-I      intronic
chr20:3101130(-) A-I      intronic
chr20:3101159(-) A-I      intronic
chr20:3124510(-) A-I      intronic
chr20:3124376(-) A-I      intronic
chr20:3124357(-) A-I      intronic
chr20:3124297(-) A-I      intronic
chr20:3124277(-) A-I      intronic
chr20:3124268(-) A-I      intronic
chr20:3124003(-) A-I      intronic
chr20:3123880(-) A-I      intronic
chr20:3123858(-) A-I      intronic
chr20:3123848(-) A-I      intronic
chr20:3123816(-) A-I      intronic
chr20:3123811(-) A-I      intronic
chr20:3122441(-) A-I      intronic
chr20:3122077(-) A-I      intronic
chr20:3122068(-) A-I      intronic
chr20:3122050(-) A-I      intronic
chr20:3121733(-) A-I      intronic
chr20:3121676(-) A-I      intronic
chr20:3120765(-) A-I      intronic
chr20:3120629(-) A-I      intronic
chr20:3118134(-) A-I      intronic
chr20:3118133(-) A-I      intronic
chr20:3100243(-) A-I      intronic
chr20:3099463(-) A-I      intronic
chr20:3099074(-) A-I      intronic
chr20:3098975(-) A-I      intronic
chr20:3098956(-) A-I      intronic
chr20:3117042(-) A-I      intronic
chr20:3114654(-) A-I      intronic
chr20:3098292(-) A-I      intronic
chr20:3098267(-) A-I      intronic
chr20:3098244(-) A-I      intronic
chr20:3098221(-) A-I      intronic
chr20:3096674(-) A-I      intronic
chr20:3096647(-) A-I      intronic
chr20:3096638(-) A-I      intronic
chr20:3096603(-) A-I      intronic
chr20:3096584(-) A-I      intronic
chr20:3096581(-) A-I      intronic
chr20:3096580(-) A-I      intronic
chr20:3096578(-) A-I      intronic
chr20:3096577(-) A-I      intronic
chr20:3096574(-) A-I      intronic
chr20:3096554(-) A-I      intronic
chr20:3096548(-) A-I      intronic
chr20:3096515(-) A-I      intronic
chr20:3096435(-) A-I      intronic
chr20:3100270(-) A-I      intronic
chr20:3132943(-) A-I      intronic
chr20:3126953(-) A-I      intronic
chr20:3126865(-) A-I      intronic
chr20:3126629(-) A-I      intronic
chr20:3126568(-) A-I      intronic
chr20:3126509(-) A-I      intronic
chr20:3126475(-) A-I      intronic
chr20:3114653(-) A-I      intronic
chr20:3114537(-) A-I      intronic
chr20:3110671(-) A-I      intronic
chr20:3109365(-) A-I      intronic
chr20:3104811(-) A-I      intronic
chr20:3101126(-) A-I      intronic
chr20:3100392(-) A-I      intronic
chr20:3100391(-) A-I      intronic
chr20:3100372(-) A-I      intronic
chr20:3100368(-) A-I      intronic
chr20:3089005(-) A-I      3'UTR
chr20:3089004(-) A-I      3'UTR
chr20:3088991(-) A-I      3'UTR
chr20:3088942(-) A-I      3'UTR
chr20:3088936(-) A-I      3'UTR
chr20:3088933(-) A-I      3'UTR
chr20:3088929(-) A-I      3'UTR
chr20:3088927(-) A-I      3'UTR
chr20:3088924(-) A-I      3'UTR
chr20:3088921(-) A-I      3'UTR
chr20:3088918(-) A-I      3'UTR
chr20:3088886(-) A-I      3'UTR
chr20:3088882(-) A-I      3'UTR
chr20:3088878(-) A-I      3'UTR
chr20:3088821(-) A-I      3'UTR
chr20:3088765(-) A-I      3'UTR
chr20:3089029(-) A-I      3'UTR
chr20:3089035(-) A-I      3'UTR
chr20:3089347(-) A-I      3'UTR
chr20:3089375(-) A-I      3'UTR
chr20:3089406(-) A-I      3'UTR
chr20:3089407(-) A-I      3'UTR
chr20:3089431(-) A-I      3'UTR
chr20:3089457(-) A-I      3'UTR
chr20:3089464(-) A-I      3'UTR
chr20:3089467(-) A-I      3'UTR
chr20:3089471(-) A-I      3'UTR
chr20:3089479(-) A-I      3'UTR
chr20:3089497(-) A-I      3'UTR
chr20:3089510(-) A-I      3'UTR
chr20:3089517(-) A-I      3'UTR
chr20:3089533(-) A-I      3'UTR
chr20:3089552(-) A-I      3'UTR
chr20:3089021(-) A-I      3'UTR
chr20:3137071(-) A-I      intronic
chr20:3136918(-) A-I      intronic
chr20:3138814(-) A-I      intronic
chr20:3131635(-) A-I      intronic
chr20:3131575(-) A-I      intronic
chr20:3131672(-) A-I      intronic
chr20:3133129(-) A-I      intronic
chr20:3131752(-) A-I      intronic
chr20:3138727(-) A-I      intronic
chr20:3116564(-) A-I      intronic
chr20:3088948(-) A-I      3'UTR
chr20:3088923(-) A-I      3'UTR
chr20:3088891(-) A-I      3'UTR
chr20:3089496(-) A-I      3'UTR
chr20:3088850(-) A-I      3'UTR
chr20:3089348(-) A-I      3'UTR
chr20:3088980(-) A-I      3'UTR
chr20:3138849(-) A-I      intronic
chr20:3131795(-) A-I      intronic
chr20:3096673(-) A-I      intronic
chr20:3137664(-) A-I      intronic
chr20:3131821(-) A-I      intronic
chr20:3137724(-) A-I      intronic
chr20:3126924(-) A-I      intronic
chr20:3133369(-) A-I      intronic
chr20:3116566(-) A-I      intronic
chr20:3126342(-) A-I      intronic
chr20:3136943(-) A-I      intronic
chr20:3137065(-) A-I      intronic
chr20:3135838(-) A-I      intronic
chr20:3126223(-) A-I      intronic
chr20:3131650(-) A-I      intronic
chr20:3131776(-) A-I      intronic
chr20:3104749(-) A-I      intronic
chr20:3124522(-) A-I      intronic
chr20:3135636(-) A-I      intronic
chr20:3135617(-) A-I      intronic
chr20:3124523(-) A-I      intronic
chr20:3133336(-) A-I      intronic
chr20:3116565(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UBOX5
chr20:3088850(-) A-I exon 3'UTR    15342557
chr20:3088922(-) A-I exon 3'UTR    15342557   //15258596
chr20:3088923(-) A-I exon 3'UTR    15342557   //15258596
chr20:3088948(-) A-I exon 3'UTR    15342557   //15258596
chr20:3088980(-) A-I exon 3'UTR    15342557   //15258596
chr20:3089348(-) A-I exon 3'UTR    15342557   //15258596
chr20:3126209(-) A-I intron -    15342557
chr20:3126213(-) A-I intron -    15342557
chr20:3126223(-) A-I intron -    15342557
chr20:3126282(-) A-I intron -    15342557
chr20:3126342(-) A-I intron -    15342557
chr20:3126924(-) A-I intron -    15342557
chr20:3089496(-) A-I exon 3'UTR    22327324
chr20:3088980(-) A-G exon 3'UTR    21725310
chr20:3089496(-) A-G exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase UBOX5
chr20:3090065-3090066(-) m6A 3'UTR       25456834
chr20:3090072-3090073(-) m6A 3'UTR       25456834
chr20:3090105-3090106(-) m6A 3'UTR       25456834
chr20:3090111-3090112(-) m6A 3'UTR       25456834
chr20:3090339-3090340(-) m6A 3'UTR       24284625//24981863
chr20:3090465-3090466(-) m6A 3'UTR       24981863//27773535
chr20:3090499-3090500(-) m6A 3'UTR       24284625//27773535
chr20:3090699-3090700(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr20:3090727-3090728(-) m6A 3'UTR       25456834//24981863//22608085
chr20:3096011-3096012(-) m6A CDS//intron       24284625//24981863//27773535//27371828
chr20:3102040-3102041(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr20:3102163-3102164(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr20:3102174-3102175(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr20:3102571-3102572(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr20:3102637-3102638(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr20:3102664-3102665(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr20:3102686-3102687(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr20:3102910-3102911(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr20:3102952-3102953(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr20:3102983-3102984(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr20:3103078-3103079(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr20:3103157-3103158(-) m6A CDS       24284625//24981863//27773535//22608085
chr20:3103978-3103979(-) m6A CDS       24284625//24981863//22608085
chr20:3127192-3127193(-) m6A intron       27773535
chr20:3127305-3127306(-) m6A intron       24284625//27773535
chr20:3127477-3127478(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:3127568-3127569(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3127602-3127603(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3127608-3127609(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3127642-3127643(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3127780-3127781(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:3127796-3127797(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:3128014-3128015(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3128032-3128033(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3128177-3128178(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22608085
chr20:3128200-3128201(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3128306-3128307(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3128401-3128402(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3128691-3128692(-) m6A intron       24981863//27773535//22608085
chr20:3128826-3128827(-) m6A intron       24981863//27773535//22608085
chr20:3128928-3128929(-) m6A intron       26404942//22608085
chr20:3129281-3129282(-) m6A intron       24284625//24981863//26404942//27773535//22608085
chr20:3129313-3129314(-) m6A intron       24284625//24981863//26404942//27773535//22608085
chr20:3129350-3129351(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3129375-3129376(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3129469-3129470(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3129543-3129544(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3129581-3129582(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3129591-3129592(-) m6A intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3129596-3129597(-) m6A intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3129689-3129690(-) m6A intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3129756-3129757(-) m6A intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3129786-3129787(-) m6A intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:3129823-3129824(-) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:3137351-3137352(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate UBOX5
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-3p
Interactor2: UBOX5

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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