Basic Information:

  VIRBase ID:  

VHID00458634

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-3p:  MIMAT0002190          RAB11B:  NM_004218     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-3p	RAB11B
miRBase Accession/Entrez ID	MIMAT0002190	9230
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	H-YPT3//NDAGSCW

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAB11B	chr19:8459614(+) A-I      intronic chr19:8459627(+) A-I      intronic chr19:8459628(+) A-I      intronic chr19:8459643(+) A-I      intronic chr19:8459656(+) A-I      intronic chr19:8459214(+) A-I      intronic chr19:8459655(+) A-I      intronic chr19:8459576(+) A-I      intronic chr19:8459652(+) A-I      intronic chr19:8459636(+) A-I      intronic chr19:8459635(+) A-I      intronic chr19:8459179(+) A-I      intronic chr19:8459654(+) A-I      intronic chr19:8459764(+) A-I      intronic chr19:8459739(+) A-I      intronic chr19:8459691(+) A-I      intronic chr19:8460259(+) A-I      intronic chr19:8459601(+) A-I      intronic chr19:8459735(+) A-I      intronic chr19:8460338(+) A-I      intronic chr19:8459568(+) A-I      intronic chr19:8459693(+) A-I      intronic chr19:8459694(+) A-I      intronic chr19:8459638(+) A-I      intronic chr19:8459169(+) A-I      intronic chr19:8459139(+) A-I      intronic chr19:8459703(+) A-I      intronic chr19:8459649(+) A-I      intronic chr19:8459181(+) A-I      intronic chr19:8460258(+) A-I      intronic chr19:8459559(+) A-I      intronic chr19:8459085(+) A-I      intronic chr19:8459716(+) A-I      intronic chr19:8459141(+) A-I      intronic chr19:8459220(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAB11B	chr19:8454920-8454921(+) m6A 5'UTR       24981863//27773535//27371828//22608085 chr19:8455092-8455093(+) m6A 5'UTR//intron       24981863//27773535//27371828//22608085 chr19:8455297-8455298(+) m6A 5'UTR//exon//intron       24284625//22575960 chr19:8455306-8455307(+) m6A 5'UTR//CDS//exon//intron       24284625//22575960 chr19:8464761-8464762(+) m6A 5'UTR//CDS//exon//intron       24284625//22575960 chr19:8464880-8464881(+) m6A 5'UTR//CDS//exon//intron       24284625//22575960 chr19:8464902-8464903(+) m6A 5'UTR//CDS//exon//intron       24284625//22575960 chr19:8467064-8467065(+) m6A 5'UTR//CDS       - chr19:8467073-8467074(+) m6A 5'UTR//CDS       - chr19:8467374-8467375(+) m6A CDS       24284625 chr19:8467394-8467395(+) m6A CDS       24284625 chr19:8467437-8467438(+) m6A CDS       24284625 chr19:8467459-8467460(+) m6A CDS//intron       24284625 chr19:8467500-8467501(+) m6A 3'UTR//intron       24284625 chr19:8467513-8467514(+) m6A 3'UTR//intron       24284625 chr19:8468321-8468322(+) m6A CDS       24284625 chr19:8468332-8468333(+) m6A CDS       24284625 chr19:8468362-8468363(+) m6A CDS       24284625//24209618 chr19:8468374-8468375(+) m6A CDS       24284625//24209618 chr19:8468402-8468403(+) m6A CDS       24284625//24209618 chr19:8468434-8468435(+) m6A CDS       24284625//24209618 chr19:8468588-8468589(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:8468656-8468657(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:8468840-8468841(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr19:8468867-8468868(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr19:8468895-8468896(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr19:8469091-8469092(+) m6A 3'UTR       24209618 chr19:8469174-8469175(+) m6A 3'UTR       - chr19:8469212-8469213(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAB11B	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-3p
Interactor2: RAB11B

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg