Detail Information

Basic Information:


  VIRBase ID:  

VHID00458482

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-3p:           YWHAZ:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-3p YWHAZ
miRBase
Accession/Entrez ID		 MIMAT0002190 7534
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - 14-3-3-zeta//HEL-S-3//HEL-S-93//HEL4//KCIP-1//POPCHAS//YWHAD

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YWHAZ
chr8:101940341(-) A-I      intronic
chr8:101942520(-) A-I      intronic
chr8:101942502(-) A-I      intronic
chr8:101942500(-) A-I      intronic
chr8:101941674(-) A-I      intronic
chr8:101941655(-) A-I      intronic
chr8:101941652(-) A-I      intronic
chr8:101941606(-) A-I      intronic
chr8:101940861(-) A-I      intronic
chr8:101940852(-) A-I      intronic
chr8:101940755(-) A-I      intronic
chr8:101940743(-) A-I      intronic
chr8:101940693(-) A-I      intronic
chr8:101940494(-) A-I      intronic
chr8:101940464(-) A-I      intronic
chr8:101940456(-) A-I      intronic
chr8:101940445(-) A-I      intronic
chr8:101940389(-) A-I      intronic
chr8:101940360(-) A-I      intronic
chr8:101942497(-) A-I      intronic
chr8:101940273(-) A-I      intronic
chr8:101940264(-) A-I      intronic
chr8:101940263(-) A-I      intronic
chr8:101939670(-) A-I      intronic
chr8:101939633(-) A-I      intronic
chr8:101939604(-) A-I      intronic
chr8:101939596(-) A-I      intronic
chr8:101939565(-) A-I      intronic
chr8:101933536(-) A-I      intronic
chr8:101933529(-) A-I      intronic
chr8:101933390(-) A-I      intronic
chr8:101933386(-) A-I      intronic
chr8:101942442(-) A-I      intronic
chr8:101958697(-) A-I      intronic
chr8:101958693(-) A-I      intronic
chr8:101941556(-) A-I      intronic
chr8:101941539(-) A-I      intronic
chr8:101941533(-) A-I      intronic
chr8:101941517(-) A-I      intronic
chr8:101939644(-) A-I      intronic
chr8:101958727(-) A-I      intronic
chr8:101939595(-) A-I      intronic
chr8:101940461(-) A-I      intronic
chr8:101939585(-) A-I      intronic
chr8:101939579(-) A-I      intronic
chr8:101939571(-) A-I      intronic
chr8:101946006(-) A-I      intronic
chr8:101945991(-) A-I      intronic
chr8:101945978(-) A-I      intronic
chr8:101945976(-) A-I      intronic
chr8:101942604(-) A-I      intronic
chr8:101958612(-) A-I      intronic
chr8:101939752(-) A-I      intronic
chr8:101940386(-) A-I      intronic
chr8:101940803(-) A-I      intronic
chr8:101939726(-) A-I      intronic
chr8:101939640(-) A-I      intronic
chr8:101941646(-) A-I      intronic
chr8:101942598(-) A-I      intronic
chr8:101942455(-) A-I      intronic
chr8:101945439(-) A-I      intronic
chr8:101940408(-) A-I      intronic
chr8:101941647(-) A-I      intronic
chr8:101941500(-) A-I      intronic
chr8:101947259(-) A-I      5'UTR
chr8:101947269(-) A-I      5'UTR
chr8:101947257(-) A-I      5'UTR
chr8:101941457(-) A-I      intronic
chr8:101939521(-) A-I      intronic
chr8:101958776(-) A-I      intronic
chr8:101942597(-) A-I      intronic
chr8:101941565(-) A-I      intronic
chr8:101939603(-) A-I      intronic
chr8:101941584(-) A-I      intronic
chr8:101942491(-) A-I      intronic
chr8:101933455(-) A-I      intronic
chr8:101939551(-) A-I      intronic
chr8:101940278(-) A-I      intronic
chr8:101941695(-) A-I      intronic
chr8:101941598(-) A-I      intronic
chr8:101942379(-) A-I      intronic
chr8:101942506(-) A-I      intronic
chr8:101958778(-) A-I      intronic
chr8:101940318(-) A-I      intronic
chr8:101941458(-) A-I      intronic
chr8:101933426(-) A-I      intronic
chr8:101939597(-) A-I      intronic
chr8:101941592(-) A-I      intronic
chr8:101938737(-) A-I      intronic
chr8:101939736(-) A-I      intronic
chr8:101940396(-) A-I      intronic
chr8:101940787(-) A-I      intronic
chr8:101939494(-) A-I      intronic
chr8:101941543(-) A-I      intronic
chr8:101940286(-) A-I      intronic
chr8:101942465(-) A-I      intronic
chr8:101942495(-) A-I      intronic
chr8:101950154(-) A-I      intronic
chr8:101953999(-) A-I      intronic
chr8:101940697(-) A-I      intronic
chr8:101940326(-) A-I      intronic
chr8:101939630(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED YWHAZ
chr8:101933915(-) A-I intron -    21960545
chr8:101940318(-) A-I intron -    21960545
chr8:101940326(-) A-I intron -    21960545
chr8:101939630(-) A-G intron -    22484847
chr8:101939640(-) A-G intron -    22484847
chr8:101939736(-) A-G intron -    22484847
chr8:101940278(-) A-G intron -    22484847
chr8:101940286(-) A-G intron -    22484847
chr8:101940318(-) A-G intron -    22484847
chr8:101940326(-) A-G intron -    22484847
chr8:101940386(-) A-G intron -    22484847
chr8:101940408(-) A-G intron -    22484847
chr8:101940697(-) A-G intron -    22484847
chr8:101941552(-) A-G intron -    22484847
chr8:101941592(-) A-G intron -    22484847
chr8:101941596(-) A-G intron -    22484847
chr8:101941646(-) A-G intron -    22484847
chr8:101941647(-) A-G intron -    22484847
chr8:101941695(-) A-G intron -    22484847
chr8:101941701(-) A-G intron -    22484847
chr8:101942429(-) A-G intron -    22484847
chr8:101942435(-) A-G intron -    22484847
chr8:101942436(-) A-G intron -    22484847
chr8:101942455(-) A-G intron -    22484847
chr8:101942465(-) A-G intron -    22484847
chr8:101942491(-) A-G intron -    22484847
chr8:101942495(-) A-G intron -    22484847
chr8:101942583(-) G-A intron -    22484847
chr8:101942597(-) A-G intron -    22484847
chr8:101946551(-) G-A intron -    22484847
chr8:101947259(-) A-G intron -    22484847
chr8:101953940(-) T-C intron -    22484847
chr8:101958611(-) A-G intron -    22484847
chr8:101958612(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YWHAZ
chr8:101929161-101929162(-) m6A 3'UTR       27773535
chr8:101929197-101929198(-) m6A 3'UTR       27773535
chr8:101931235-101931236(-) m6A 3'UTR       27773535
chr8:101931257-101931258(-) m6A 3'UTR       27773535
chr8:101931308-101931309(-) m6A 3'UTR       27773535
chr8:101931791-101931792(-) m6A 3'UTR//intron       24981863
chr8:101931873-101931874(-) m6A 3'UTR//intron       24981863
chr8:101931927-101931928(-) m6A 3'UTR//intron       24981863
chr8:101931974-101931975(-) m6A 3'UTR//intron       24981863
chr8:101932006-101932007(-) Y 3'UTR//intron       25219674
chr8:101932090-101932091(-) Y 3'UTR//intron       25219674
chr8:101944307-101944308(-) m6A 5'UTR//intron       24981863
chr8:101960892-101960893(-) m6A 5'UTR//CDS//exon//intron       24981863//27773535
chr8:101960919-101960920(-) m6A 5'UTR//CDS//exon//intron       24981863//27773535
chr8:101961084-101961085(-) m6A CDS//exon//intron       25456834//24981863//27371828//22575960
chr8:101962703-101962704(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27371828
chr8:101962761-101962762(-) m6A 5'UTR//exon//intron       25456834//24981863//27371828
chr8:101963532-101963533(-) m6A 5'UTR//intron       27773536
chr8:101963594-101963595(-) m6A 5'UTR//intron       27773536
chr8:101964161-101964162(-) m6A 5'UTR//exon//intron       24209618//25456834//24981863//27371828//27773536//22575960
chr8:101964201-101964202(-) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//27371828//27773536//22575960
chr8:101964246-101964247(-) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//27371828//27773536
chr8:101964257-101964258(-) Gm 5'UTR//exon//intron       -
chr8:101964295-101964296(-) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//27371828//27773536
chr8:101964524-101964525(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//22608085
chr8:101964607-101964608(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//22608085
chr8:101965098-101965099(-) m6A 5'UTR//exon//intron       25456834//24981863//27371828
chr8:101965519-101965520(-) m6A 5'UTR//exon       24981863
chr8:101965536-101965537(-) m6A 5'UTR//exon       24981863
chr8:101965545-101965546(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate YWHAZ
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-3p
Interactor2: YWHAZ

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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