Detail Information

Basic Information:


  VIRBase ID:  

VHID00458463

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-3p:           UBE2N:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-3p UBE2N
miRBase
Accession/Entrez ID		 MIMAT0002190 7334
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - HEL-S-71//UBC13//UBC13//UbcH-ben//UbcH13//UBCHBEN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UBE2N
chr12:93803823(-) A-I      NonSyn:Asn->Asp
chr12:93803815(-) A-I      Syn:Stp->Stp
chr12:93803816(-) A-I      Syn:Stp->Stp
chr12:93829005(-) A-I      intronic
chr12:93833160(-) A-I      intronic
chr12:93828990(-) A-I      intronic
chr12:93803799(-) A-I      3'UTR
chr12:93827992(-) A-I      intronic
chr12:93803788(-) A-I      3'UTR
chr12:93803808(-) A-I      3'UTR
chr12:93803770(-) A-I      3'UTR
chr12:93803798(-) A-I      3'UTR
chr12:93824760(-) A-I      intronic
chr12:93821922(-) A-I      intronic
chr12:93833110(-) A-I      intronic
chr12:93821859(-) A-I      intronic
chr12:93812040(-) A-I      intronic
chr12:93812017(-) A-I      intronic
chr12:93810616(-) A-I      intronic
chr12:93805741(-) A-I      intronic
chr12:93805723(-) A-I      intronic
chr12:93805719(-) A-I      intronic
chr12:93805638(-) A-I      intronic
chr12:93833208(-) A-I      intronic
chr12:93829954(-) A-I      intronic
chr12:93805637(-) A-I      intronic
chr12:93805598(-) A-I      intronic
chr12:93831508(-) A-I      intronic
chr12:93831502(-) A-I      intronic
chr12:93830043(-) A-I      intronic
chr12:93831501(-) A-I      intronic
chr12:93831483(-) A-I      intronic
chr12:93831482(-) A-I      intronic
chr12:93831453(-) A-I      intronic
chr12:93831338(-) A-I      intronic
chr12:93831316(-) A-I      intronic
chr12:93830828(-) A-I      intronic
chr12:93830099(-) A-I      intronic
chr12:93831561(-) A-I      intronic
chr12:93829665(-) A-I      intronic
chr12:93829662(-) A-I      intronic
chr12:93829640(-) A-I      intronic
chr12:93829363(-) A-I      intronic
chr12:93829210(-) A-I      intronic
chr12:93829186(-) A-I      intronic
chr12:93829166(-) A-I      intronic
chr12:93829127(-) A-I      intronic
chr12:93829119(-) A-I      intronic
chr12:93805607(-) A-I      intronic
chr12:93829066(-) A-I      intronic
chr12:93827896(-) A-I      intronic
chr12:93825922(-) A-I      intronic
chr12:93825859(-) A-I      intronic
chr12:93825851(-) A-I      intronic
chr12:93825842(-) A-I      intronic
chr12:93825836(-) A-I      intronic
chr12:93825805(-) A-I      intronic
chr12:93829019(-) A-I      intronic
chr12:93825775(-) A-I      intronic
chr12:93828992(-) A-I      intronic
chr12:93828809(-) A-I      intronic
chr12:93828789(-) A-I      intronic
chr12:93825767(-) A-I      intronic
chr12:93833060(-) A-I      intronic
chr12:93833097(-) A-I      intronic
chr12:93825753(-) A-I      intronic
chr12:93824881(-) A-I      intronic
chr12:93824854(-) A-I      intronic
chr12:93824846(-) A-I      intronic
chr12:93824840(-) A-I      intronic
chr12:93824798(-) A-I      intronic
chr12:93824761(-) A-I      intronic
chr12:93830516(-) A-I      intronic
chr12:93805545(-) A-I      intronic
chr12:93831410(-) A-I      intronic
chr12:93805747(-) A-I      intronic
chr12:93815142(-) A-I      intronic
chr12:93805740(-) A-I      intronic
chr12:93833240(-) A-I      intronic
chr12:93830014(-) A-I      intronic
chr12:93831448(-) A-I      intronic
chr12:93805671(-) A-I      intronic
chr12:93830795(-) A-I      intronic
chr12:93812083(-) A-I      intronic
chr12:93829342(-) A-I      intronic
chr12:93807721(-) A-I      intronic
chr12:93830821(-) A-I      intronic
chr12:93830468(-) A-I      intronic
chr12:93815050(-) A-I      intronic
chr12:93829004(-) A-I      intronic
chr12:93805634(-) A-I      intronic
chr12:93831457(-) A-I      intronic
chr12:93805558(-) A-I      intronic
chr12:93810369(-) A-I      intronic
chr12:93830873(-) A-I      intronic
chr12:93810368(-) A-I      intronic
chr12:93830997(-) A-I      intronic
chr12:93824708(-) A-I      intronic
chr12:93805572(-) A-I      intronic
chr12:93823044(-) A-I      intronic
chr12:93831390(-) A-I      intronic
chr12:93813012(-) A-I      intronic
chr12:93812077(-) A-I      intronic
chr12:93830036(-) A-I      intronic
chr12:93830008(-) A-I      intronic
chr12:93812023(-) A-I      intronic
chr12:93820969(-) A-I      intronic
chr12:93813018(-) A-I      intronic
chr12:93805630(-) A-I      intronic
chr12:93813004(-) A-I      intronic
chr12:93811965(-) A-I      intronic
chr12:93821909(-) A-I      intronic
chr12:93812039(-) A-I      intronic
chr12:93821919(-) A-I      intronic
chr12:93820763(-) A-I      intronic
chr12:93826820(-) A-I      intronic
chr12:93826982(-) A-I      intronic
chr12:93831489(-) A-I      intronic
chr12:93830024(-) A-I      intronic
chr12:93828840(-) A-I      intronic
chr12:93833124(-) A-I      intronic
chr12:93815212(-) A-I      intronic
chr12:93810584(-) A-I      intronic
chr12:93810603(-) A-I      intronic
chr12:93811967(-) A-I      intronic
chr12:93826847(-) A-I      intronic
chr12:93825921(-) A-I      intronic
chr12:93829966(-) A-I      intronic
chr12:93833143(-) A-I      intronic
chr12:93831356(-) A-I      intronic
chr12:93829970(-) A-I      intronic
chr12:93811795(-) A-I      intronic
chr12:93830464(-) A-I      intronic
chr12:93824964(-) A-I      intronic
chr12:93815110(-) A-I      intronic
chr12:93830518(-) A-I      intronic
chr12:93827985(-) A-I      intronic
chr12:93833028(-) A-I      intronic
chr12:93828801(-) A-I      intronic
chr12:93830079(-) A-I      intronic
chr12:93830510(-) A-I      intronic
chr12:93821862(-) A-I      intronic
chr12:93833130(-) A-I      intronic
chr12:93821863(-) A-I      intronic
chr12:93821855(-) A-I      intronic
chr12:93830152(-) A-I      intronic
chr12:93831328(-) A-I      intronic
chr12:93831355(-) A-I      intronic
chr12:93827826(-) A-I      intronic
chr12:93825973(-) A-I      intronic
chr12:93821865(-) A-I      intronic
chr12:93830078(-) A-I      intronic
chr12:93805541(-) A-I      intronic
chr12:93826817(-) A-I      intronic
chr12:93830022(-) A-I      intronic
chr12:93831407(-) A-I      intronic
chr12:93810449(-) A-I      intronic
chr12:93830153(-) A-I      intronic
chr12:93830548(-) A-I      intronic
chr12:93830040(-) A-I      intronic
chr12:93830437(-) A-I      intronic
chr12:93810446(-) A-I      intronic
chr12:93821938(-) A-I      intronic
chr12:93810447(-) A-I      intronic
chr12:93821806(-) A-I      intronic
chr12:93812045(-) A-I      intronic
chr12:93830772(-) A-I      intronic
chr12:93821910(-) A-I      intronic
chr12:93805503(-) A-I      intronic
chr12:93821759(-) A-I      intronic
chr12:93828779(-) A-I      intronic
chr12:93813054(-) A-I      intronic
chr12:93815074(-) A-I      intronic
chr12:93831322(-) A-I      intronic
chr12:93828832(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UBE2N
chr12:93830079(-) A-I intron -    21960545
chr12:93810449(-) A-G intron -    22484847
chr12:93830079(-) A-G intron -    22484847
chr12:93830510(-) A-G intron -    22484847
chr12:93830516(-) A-G intron -    22484847
chr12:93805630(-) A-G intron -    22484847
chr12:93805747(-) A-G intron -    22484847
chr12:93805758(-) T-C intron -    22484847
chr12:93810446(-) A-G intron -    22484847
chr12:93810447(-) A-G intron -    22484847
chr12:93810603(-) A-G intron -    22484847
chr12:93812039(-) A-G intron -    22484847
chr12:93812045(-) A-G intron -    22484847
chr12:93813012(-) A-G intron -    22484847
chr12:93821919(-) A-G intron -    22484847
chr12:93821938(-) A-G intron -    22484847
chr12:93826847(-) A-G intron -    22484847
chr12:93826982(-) A-G intron -    22484847
chr12:93827985(-) A-G intron -    22484847
chr12:93828801(-) A-G intron -    22484847
chr12:93829342(-) A-G intron -    22484847
chr12:93829966(-) A-G intron -    22484847
chr12:93829970(-) A-G intron -    22484847
chr12:93830013(-) G-A intron -    22484847
chr12:93830014(-) A-G intron -    22484847
chr12:93830024(-) A-G intron -    22484847
chr12:93830036(-) A-G intron -    22484847
chr12:93830078(-) A-G intron -    22484847
chr12:93830149(-) T-C intron -    22484847
chr12:93830152(-) A-G intron -    22484847
chr12:93830153(-) A-G intron -    22484847
chr12:93830437(-) A-G intron -    22484847
chr12:93830464(-) A-G intron -    22484847
chr12:93830518(-) A-G intron -    22484847
chr12:93830821(-) A-G intron -    22484847
chr12:93831322(-) A-G intron -    22484847
chr12:93831328(-) A-G intron -    22484847
chr12:93831355(-) A-G intron -    22484847
chr12:93831356(-) A-G intron -    22484847
chr12:93831390(-) A-G intron -    22484847
chr12:93831407(-) A-G intron -    22484847
chr12:93831410(-) A-G intron -    22484847
chr12:93831448(-) A-G intron -    22484847
chr12:93831457(-) A-G intron -    22484847
chr12:93831489(-) A-G intron -    22484847
chr12:93833130(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase UBE2N
chr12:93799459-93799460(-) m6A exon       27773535
chr12:93799522-93799523(-) m6A 3'UTR//exon       27773535
chr12:93800955-93800956(-) m6A 3'UTR//exon       27773535
chr12:93800999-93801000(-) m6A 3'UTR//exon       25456834//27773535//22608085
chr12:93801018-93801019(-) m6A 3'UTR//exon       25456834//27773535//22608085
chr12:93801045-93801046(-) m6A 3'UTR//exon       25456834//27773535//22608085
chr12:93801092-93801093(-) m6A 3'UTR//exon       27773535//22608085
chr12:93803700-93803701(-) m6A 3'UTR       24284625
chr12:93803724-93803725(-) m6A 3'UTR       24284625//24981863
chr12:93803738-93803739(-) m6A 3'UTR       24284625//24981863
chr12:93803767-93803768(-) m6A 3'UTR       24284625//24981863
chr12:93803843-93803844(-) m6A 3'UTR//CDS       24284625//24981863
chr12:93803895-93803896(-) m6A 3'UTR//intron       24284625//24981863
chr12:93804446-93804447(-) m6A 3'UTR//intron       24981863
chr12:93804512-93804513(-) m6A 3'UTR//CDS//intron       24981863
chr12:93804863-93804864(-) m6A CDS//intron       24284625//27773535
chr12:93804940-93804941(-) m6A 5'UTR//CDS       24284625//27773535//27371828
chr12:93804946-93804947(-) m6A 5'UTR//CDS       24284625//27773535//27371828
chr12:93804954-93804955(-) m6A 5'UTR//CDS       24284625//27773535//27371828
chr12:93805027-93805028(-) m6A 5'UTR//CDS       24284625//25456834//27773535//27371828//27773536//22608085
chr12:93805051-93805052(-) m6A 5'UTR//CDS       24284625//25456834//27773535//27371828//27773536//22608085
chr12:93805071-93805072(-) m6A 5'UTR//CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr12:93818074-93818075(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr12:93835676-93835677(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr12:93835688-93835689(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr12:93835728-93835729(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr12:93835803-93835804(-) m6A 5'UTR       25456834//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate UBE2N
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-3p
Interactor2: UBE2N

Evidence Support:


Prediction-Evidence cRep//miRanda
Support Database RepTar//VmiReg

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