Detail Information

Basic Information:


  VIRBase ID:  

VHID00457000

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-3p:           CANT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-6-3p CANT1
miRBase
Accession/Entrez ID		 MIMAT0002189 124583
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - DBQD//DBQD1//EDM7//SCAN-1//SCAN1//SHAPY

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CANT1
chr17:76995864(-) A-I      intronic
chr17:76999254(-) A-I      intronic
chr17:76999255(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CANT1
chr17:76999254(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CANT1
chr17:76988000-76988001(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22575960//22608085
chr17:76988017-76988018(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22575960//22608085
chr17:76988024-76988025(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22575960//22608085
chr17:76988181-76988182(-) Cm 3'UTR       -
chr17:76988263-76988264(-) m6A 3'UTR//intron       24284625//25456834//24981863//26404942//27371828//27773536
chr17:76988299-76988300(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27371828//27773536
chr17:76988316-76988317(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27371828//27773536
chr17:76988496-76988497(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:76988568-76988569(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr17:76988704-76988705(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:76988732-76988733(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:76989025-76989026(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:76989093-76989094(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:76989223-76989224(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:76989238-76989239(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:76989441-76989442(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76989472-76989473(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76989515-76989516(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:76989539-76989540(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:76989580-76989581(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:76989597-76989598(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:76989618-76989619(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:76989675-76989676(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:76989740-76989741(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76991152-76991153(-) m6A CDS//exon//intron       24284625//24209618//27773536
chr17:76991161-76991162(-) m6A CDS//exon//intron       24284625//24209618//27773536
chr17:76991203-76991204(-) m6A CDS//exon//intron       24284625//24209618//27773535//27371828//27773536
chr17:76991319-76991320(-) m6A exon//intron       24284625//24209618//27773535//27371828//27773536//22575960//22608085
chr17:76993064-76993065(-) m6A CDS//intron       24284625//24209618//27773535//27371828//27773536//22575960//22608085
chr17:76993139-76993140(-) Cm CDS       -
chr17:76993176-76993177(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993255-76993256(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993261-76993262(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993282-76993283(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993291-76993292(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993336-76993337(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993363-76993364(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993369-76993370(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993409-76993410(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr17:76993597-76993598(-) m6A CDS       24284625//24209618//27773536//22575960
chr17:76993786-76993787(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:76993943-76993944(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr17:76993976-76993977(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr17:76994015-76994016(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr17:76994040-76994041(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr17:76994260-76994261(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr17:76994264-76994265(-) m6A 5'UTR//exon//intron       -
chr17:76994268-76994269(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr17:76994274-76994275(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr17:76994343-76994344(-) m6A 5'UTR//exon//intron       25456834//24981863//27371828//27773536
chr17:76996301-76996302(-) m6A 5'UTR//exon//intron       24284625
chr17:76996311-76996312(-) m6A 5'UTR//exon//intron       24284625
chr17:76996316-76996317(-) m6A 5'UTR//exon//intron       24284625
chr17:77001550-77001551(-) m6A 5'UTR//exon//intron       27371828
chr17:77005946-77005947(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CANT1
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Retinoblastoma cell lines (Weri-Rb1|Y79)     32366932
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-6-3p
Interactor2: CANT1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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