Basic Information:

  VIRBase ID:  

VHID00455791

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-3p:  MIMAT0002189          CRTC1:  NM_015321     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-6-3p	CRTC1
miRBase Accession/Entrez ID	MIMAT0002189	23373
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Mam-2//MAML2//MECT1//TORC-1//TORC1//WAMTP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CRTC1	chr19:18797225(+) A-I      intronic chr19:18797224(+) A-I      intronic chr19:18876515(+) A-I      intronic chr19:18876521(+) A-I      intronic chr19:18876524(+) A-I      intronic chr19:18863190(+) A-I      intronic chr19:18862079(+) A-I      intronic chr19:18862078(+) A-I      intronic chr19:18797295(+) A-I      intronic chr19:18797181(+) A-I      intronic chr19:18862749(+) A-I      intronic chr19:18797306(+) A-I      intronic chr19:18866979(+) A-I      intronic chr19:18866889(+) A-I      intronic chr19:18864036(+) A-I      intronic chr19:18863892(+) A-I      intronic chr19:18862070(+) A-I      intronic chr19:18859459(+) A-I      intronic chr19:18858839(+) A-I      intronic chr19:18858828(+) A-I      intronic chr19:18804433(+) A-I      intronic chr19:18878170(+) A-I      intronic chr19:18858821(+) A-I      intronic chr19:18843639(+) A-I      intronic chr19:18840129(+) A-I      intronic chr19:18839981(+) A-I      intronic chr19:18839885(+) A-I      intronic chr19:18839697(+) A-I      intronic chr19:18839692(+) A-I      intronic chr19:18839600(+) A-I      intronic chr19:18839588(+) A-I      intronic chr19:18839534(+) A-I      intronic chr19:18839415(+) A-I      intronic chr19:18838719(+) A-I      intronic chr19:18838671(+) A-I      intronic chr19:18838661(+) A-I      intronic chr19:18838074(+) A-I      intronic chr19:18878110(+) A-I      intronic chr19:18877359(+) A-I      intronic chr19:18837661(+) A-I      intronic chr19:18837625(+) A-I      intronic chr19:18827296(+) A-I      intronic chr19:18825171(+) A-I      intronic chr19:18823650(+) A-I      intronic chr19:18877276(+) A-I      intronic chr19:18877132(+) A-I      intronic chr19:18876771(+) A-I      intronic chr19:18863676(+) A-I      intronic chr19:18863364(+) A-I      intronic chr19:18823620(+) A-I      intronic chr19:18823586(+) A-I      intronic chr19:18823514(+) A-I      intronic chr19:18823279(+) A-I      intronic chr19:18823008(+) A-I      intronic chr19:18818590(+) A-I      intronic chr19:18818549(+) A-I      intronic chr19:18816269(+) A-I      intronic chr19:18812442(+) A-I      intronic chr19:18863222(+) A-I      intronic chr19:18863208(+) A-I      intronic chr19:18808320(+) A-I      intronic chr19:18805815(+) A-I      intronic chr19:18805360(+) A-I      intronic chr19:18804902(+) A-I      intronic chr19:18804782(+) A-I      intronic chr19:18804564(+) A-I      intronic chr19:18804484(+) A-I      intronic chr19:18804480(+) A-I      intronic chr19:18804475(+) A-I      intronic chr19:18804469(+) A-I      intronic chr19:18804120(+) A-I      intronic chr19:18803356(+) A-I      intronic chr19:18803313(+) A-I      intronic chr19:18803304(+) A-I      intronic chr19:18803291(+) A-I      intronic chr19:18803246(+) A-I      intronic chr19:18802799(+) A-I      intronic chr19:18802783(+) A-I      intronic chr19:18802313(+) A-I      intronic chr19:18802077(+) A-I      intronic chr19:18802048(+) A-I      intronic chr19:18801706(+) A-I      intronic chr19:18801672(+) A-I      intronic chr19:18801650(+) A-I      intronic chr19:18862822(+) A-I      intronic chr19:18876612(+) A-I      intronic chr19:18876595(+) A-I      intronic chr19:18868681(+) A-I      intronic chr19:18878243(+) A-I      intronic chr19:18878218(+) A-I      intronic chr19:18862821(+) A-I      intronic chr19:18862809(+) A-I      intronic chr19:18801611(+) A-I      intronic chr19:18801580(+) A-I      intronic chr19:18799946(+) A-I      intronic chr19:18799901(+) A-I      intronic chr19:18799895(+) A-I      intronic chr19:18799892(+) A-I      intronic chr19:18799445(+) A-I      intronic chr19:18797398(+) A-I      intronic chr19:18797307(+) A-I      intronic chr19:18862803(+) A-I      intronic chr19:18862761(+) A-I      intronic chr19:18797305(+) A-I      intronic chr19:18797297(+) A-I      intronic chr19:18863258(+) A-I      intronic chr19:18839433(+) A-I      intronic chr19:18823512(+) A-I      intronic chr19:18858359(+) A-I      intronic chr19:18808262(+) A-I      intronic chr19:18823649(+) A-I      intronic chr19:18838228(+) A-I      intronic chr19:18878183(+) A-I      intronic chr19:18804482(+) A-I      intronic chr19:18802555(+) A-I      intronic chr19:18840408(+) A-I      intronic chr19:18876613(+) A-I      intronic chr19:18814402(+) A-I      intronic chr19:18876686(+) A-I      intronic chr19:18797196(+) A-I      intronic chr19:18862764(+) A-I      intronic chr19:18858632(+) A-I      intronic chr19:18813867(+) A-I      intronic chr19:18815346(+) A-I      intronic chr19:18805343(+) A-I      intronic chr19:18865817(+) A-I      intronic chr19:18863351(+) A-I      intronic chr19:18805372(+) A-I      intronic chr19:18801564(+) A-I      intronic chr19:18815253(+) A-I      intronic chr19:18863628(+) A-I      intronic chr19:18864777(+) A-I      intronic chr19:18804552(+) A-I      intronic chr19:18838270(+) A-I      intronic chr19:18801715(+) A-I      intronic chr19:18805466(+) A-I      intronic chr19:18804431(+) A-I      intronic chr19:18865111(+) A-I      intronic chr19:18840373(+) A-I      intronic chr19:18837483(+) A-I      intronic chr19:18805432(+) A-I      intronic chr19:18837616(+) A-I      intronic chr19:18804757(+) A-I      intronic chr19:18876728(+) A-I      intronic chr19:18862816(+) A-I      intronic chr19:18859219(+) A-I      intronic chr19:18865212(+) A-I      intronic chr19:18822880(+) A-I      intronic chr19:18876672(+) A-I      intronic chr19:18860327(+) A-I      intronic chr19:18878261(+) A-I      intronic chr19:18802663(+) A-I      intronic chr19:18876957(+) A-I      intronic chr19:18858753(+) A-I      intronic chr19:18840300(+) A-I      intronic chr19:18796316(+) A-I      intronic chr19:18862333(+) A-I      intronic chr19:18863312(+) A-I      intronic chr19:18806524(+) A-I      intronic chr19:18839376(+) A-I      intronic chr19:18844799(+) A-I      intronic chr19:18877006(+) A-I      intronic chr19:18863520(+) A-I      intronic chr19:18839762(+) A-I      intronic chr19:18804023(+) A-I      intronic chr19:18803249(+) A-I      intronic chr19:18863474(+) A-I      intronic chr19:18804088(+) A-I      intronic chr19:18837615(+) A-I      intronic chr19:18822817(+) A-I      intronic chr19:18840305(+) A-I      intronic chr19:18863367(+) A-I      intronic chr19:18858325(+) A-I      intronic chr19:18877031(+) A-I      intronic chr19:18837711(+) A-I      intronic chr19:18802161(+) A-I      intronic chr19:18806518(+) A-I      intronic chr19:18878125(+) A-I      intronic chr19:18818572(+) A-I      intronic chr19:18859390(+) A-I      intronic chr19:18818533(+) A-I      intronic chr19:18806564(+) A-I      intronic chr19:18806560(+) A-I      intronic chr19:18867084(+) A-I      intronic chr19:18862765(+) A-I      intronic chr19:18859115(+) A-I      intronic chr19:18803708(+) A-I      intronic chr19:18863268(+) A-I      intronic chr19:18863648(+) A-I      intronic chr19:18876993(+) A-I      intronic chr19:18840394(+) A-I      intronic chr19:18805506(+) A-I      intronic chr19:18797203(+) A-I      intronic chr19:18802143(+) A-I      intronic chr19:18797328(+) A-I      intronic chr19:18878237(+) A-I      intronic chr19:18876502(+) A-I      intronic chr19:18805864(+) A-I      intronic chr19:18840430(+) A-I      intronic chr19:18876749(+) A-I      intronic chr19:18877060(+) A-I      intronic chr19:18806077(+) A-I      intronic chr19:18876608(+) A-I      intronic chr19:18863603(+) A-I      intronic chr19:18859218(+) A-I      intronic chr19:18878244(+) A-I      intronic chr19:18878137(+) A-I      intronic chr19:18805409(+) A-I      intronic chr19:18866477(+) A-I      intronic chr19:18817145(+) A-I      intronic chr19:18878229(+) A-I      intronic chr19:18806515(+) A-I      intronic chr19:18877012(+) A-I      intronic chr19:18838736(+) A-I      intronic chr19:18806522(+) A-I      intronic chr19:18798114(+) A-I      intronic chr19:18802106(+) A-I      intronic chr19:18802623(+) A-I      intronic chr19:18876561(+) A-I      intronic chr19:18816293(+) A-I      intronic chr19:18863403(+) A-I      intronic chr19:18866095(+) A-I      intronic chr19:18863350(+) A-I      intronic chr19:18815479(+) A-I      intronic chr19:18829221(+) A-I      intronic chr19:18863637(+) A-I      intronic chr19:18823181(+) A-I      intronic chr19:18863152(+) A-I      intronic chr19:18876606(+) A-I      intronic chr19:18863965(+) A-I      intronic chr19:18802624(+) A-I      intronic chr19:18813879(+) A-I      intronic chr19:18878103(+) A-I      intronic chr19:18841926(+) A-I      intronic chr19:18802247(+) A-I      intronic chr19:18863821(+) A-I      intronic chr19:18797202(+) A-I      intronic chr19:18878198(+) A-I      intronic chr19:18863668(+) A-I      intronic chr19:18806492(+) A-I      intronic chr19:18802653(+) A-I      intronic chr19:18838810(+) A-I      intronic chr19:18863329(+) A-I      intronic chr19:18839455(+) A-I      intronic chr19:18804551(+) A-I      intronic chr19:18862884(+) A-I      intronic chr19:18867022(+) A-I      intronic chr19:18876696(+) A-I      intronic chr19:18840248(+) A-I      intronic chr19:18876619(+) A-I      intronic chr19:18829216(+) A-I      intronic chr19:18797890(+) A-I      intronic chr19:18876575(+) A-I      intronic chr19:18866996(+) A-I      intronic chr19:18823207(+) A-I      intronic chr19:18817133(+) A-I      intronic chr19:18801799(+) A-I      intronic chr19:18876611(+) A-I      intronic chr19:18839495(+) A-I      intronic chr19:18876731(+) A-I      intronic chr19:18803390(+) A-I      intronic chr19:18822890(+) A-I      intronic chr19:18805881(+) A-I      intronic chr19:18797310(+) A-I      intronic chr19:18878149(+) A-I      intronic chr19:18804106(+) A-I      intronic chr19:18802654(+) A-I      intronic chr19:18878231(+) A-I      intronic chr19:18859425(+) A-I      intronic chr19:18814591(+) A-I      intronic chr19:18865928(+) A-I      intronic chr19:18876736(+) A-I      intronic chr19:18804778(+) A-I      intronic chr19:18832492(+) A-I      intronic chr19:18805942(+) A-I      intronic chr19:18866965(+) A-I      intronic chr19:18863391(+) A-I      intronic chr19:18803932(+) A-I      intronic chr19:18877158(+) A-I      intronic chr19:18859522(+) A-I      intronic chr19:18876609(+) A-I      intronic chr19:18838716(+) A-I      intronic chr19:18864764(+) A-I      intronic chr19:18823198(+) A-I      intronic chr19:18863814(+) A-I      intronic chr19:18877129(+) A-I      intronic chr19:18862273(+) A-I      intronic chr19:18862814(+) A-I      intronic chr19:18849593(+) A-I      intronic chr19:18806017(+) A-I      intronic chr19:18823253(+) A-I      intronic chr19:18876950(+) A-I      intronic chr19:18802732(+) A-I      intronic chr19:18840326(+) A-I      intronic chr19:18863199(+) A-I      intronic chr19:18801937(+) A-I      intronic chr19:18803332(+) A-I      intronic chr19:18801578(+) A-I      intronic chr19:18863471(+) A-I      intronic chr19:18804821(+) A-I      intronic chr19:18812528(+) A-I      intronic chr19:18876673(+) A-I      intronic chr19:18863939(+) A-I      intronic chr19:18859412(+) A-I      intronic chr19:18815331(+) A-I      intronic chr19:18806513(+) A-I      intronic chr19:18859428(+) A-I      intronic chr19:18865938(+) A-I      intronic chr19:18804159(+) A-I      intronic chr19:18805481(+) A-I      intronic chr19:18860284(+) A-I      intronic chr19:18805826(+) A-I      intronic chr19:18864648(+) A-I      intronic chr19:18865825(+) A-I      intronic chr19:18797965(+) A-I      intronic chr19:18866139(+) A-I      intronic chr19:18802235(+) A-I      intronic chr19:18865310(+) A-I      intronic chr19:18805408(+) A-I      intronic chr19:18862824(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CRTC1	chr19:18892734(+) A-I exon 3'UTR    19478186 chr19:18878261(+) A-I intron -    21960545 chr19:18803332(+) A-G intron -    22484847 chr19:18815253(+) A-G intron -    22484847 chr19:18862150(+) A-G intron -    22484847 chr19:18862765(+) A-G intron -    22484847 chr19:18862884(+) A-G intron -    22484847 chr19:18863329(+) A-G intron -    22484847 chr19:18863520(+) A-G intron -    22484847 chr19:18864764(+) A-G intron -    22484847 chr19:18864777(+) A-G intron -    22484847 chr19:18878237(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CRTC1	chr19:18794525-18794526(+) m6A CDS       24981863 chr19:18794612-18794613(+) m6A CDS       - chr19:18856657-18856658(+) m6A CDS       24284625 chr19:18856668-18856669(+) m6A CDS       24284625 chr19:18856693-18856694(+) m6A CDS       24284625 chr19:18856753-18856754(+) m6A CDS       - chr19:18857908-18857909(+) m6A CDS       - chr19:18864384-18864385(+) m6A CDS       24284625 chr19:18870843-18870844(+) m6A CDS       24284625 chr19:18870939-18870940(+) m6A CDS       24284625//24981863 chr19:18879565-18879566(+) m6A CDS//intron       24284625//24981863 chr19:18886574-18886575(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr19:18888014-18888015(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:18888083-18888084(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:18888113-18888114(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:18888166-18888167(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:18888181-18888182(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:18888746-18888747(+) m6A 3'UTR       24981863 chr19:18892645-18892646(+) m6A 3'UTR       - chr19:18892736-18892737(+) m6A 3'UTR       25456834//22608085 chr19:18892765-18892766(+) m6A 3'UTR       25456834//22608085 chr19:18892777-18892778(+) m6A 3'UTR       25456834//22608085 chr19:18892853-18892854(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CRTC1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-6-3p
Interactor2: CRTC1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg