Basic Information:

  VIRBase ID:  

VHID00455565

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-3p:  MIMAT0002189          ARFGEF2:  NM_006420     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-6-3p	ARFGEF2
miRBase Accession/Entrez ID	MIMAT0002189	10564
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BIG2//dJ1164I10.1//PVNH2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARFGEF2	chr20:47579637(+) A-I      intronic chr20:47614586(+) A-I      intronic chr20:47576358(+) A-I      intronic chr20:47543075(+) A-I      intronic chr20:47648389(+) A-I      intronic chr20:47576399(+) A-I      intronic chr20:47613170(+) A-I      intronic chr20:47576246(+) A-I      intronic chr20:47623928(+) A-I      intronic chr20:47614570(+) A-I      intronic chr20:47648293(+) A-I      intronic chr20:47619366(+) A-I      intronic chr20:47614606(+) A-I      intronic chr20:47648410(+) A-I      intronic chr20:47579549(+) A-I      intronic chr20:47648310(+) A-I      intronic chr20:47579559(+) A-I      intronic chr20:47648314(+) A-I      intronic chr20:47648412(+) A-I      intronic chr20:47560208(+) A-I      intronic chr20:47560211(+) A-I      intronic chr20:47561123(+) A-I      intronic chr20:47561127(+) A-I      intronic chr20:47561137(+) A-I      intronic chr20:47561139(+) A-I      intronic chr20:47562170(+) A-I      intronic chr20:47562187(+) A-I      intronic chr20:47562207(+) A-I      intronic chr20:47562222(+) A-I      intronic chr20:47606566(+) A-I      intronic chr20:47606593(+) A-I      intronic chr20:47606595(+) A-I      intronic chr20:47606596(+) A-I      intronic chr20:47612738(+) A-I      intronic chr20:47612759(+) A-I      intronic chr20:47612814(+) A-I      intronic chr20:47612845(+) A-I      intronic chr20:47612849(+) A-I      intronic chr20:47647470(+) A-I      intronic chr20:47562246(+) A-I      intronic chr20:47562250(+) A-I      intronic chr20:47562296(+) A-I      intronic chr20:47647798(+) A-I      intronic chr20:47619566(+) A-I      intronic chr20:47562301(+) A-I      intronic chr20:47562307(+) A-I      intronic chr20:47647803(+) A-I      intronic chr20:47647847(+) A-I      intronic chr20:47647861(+) A-I      intronic chr20:47647941(+) A-I      intronic chr20:47648189(+) A-I      intronic chr20:47648197(+) A-I      intronic chr20:47648461(+) A-I      intronic chr20:47563244(+) A-I      intronic chr20:47563298(+) A-I      intronic chr20:47563308(+) A-I      intronic chr20:47563478(+) A-I      intronic chr20:47563526(+) A-I      intronic chr20:47563658(+) A-I      intronic chr20:47563686(+) A-I      intronic chr20:47563765(+) A-I      intronic chr20:47563778(+) A-I      intronic chr20:47563803(+) A-I      intronic chr20:47564007(+) A-I      intronic chr20:47564046(+) A-I      intronic chr20:47564188(+) A-I      intronic chr20:47572354(+) A-I      intronic chr20:47572364(+) A-I      intronic chr20:47572933(+) A-I      intronic chr20:47573217(+) A-I      intronic chr20:47573382(+) A-I      intronic chr20:47573391(+) A-I      intronic chr20:47576221(+) A-I      intronic chr20:47576365(+) A-I      intronic chr20:47576371(+) A-I      intronic chr20:47576400(+) A-I      intronic chr20:47577107(+) A-I      intronic chr20:47577160(+) A-I      intronic chr20:47577506(+) A-I      intronic chr20:47577510(+) A-I      intronic chr20:47578597(+) A-I      intronic chr20:47578638(+) A-I      intronic chr20:47613256(+) A-I      intronic chr20:47613903(+) A-I      intronic chr20:47614007(+) A-I      intronic chr20:47614489(+) A-I      intronic chr20:47614524(+) A-I      intronic chr20:47619252(+) A-I      intronic chr20:47619374(+) A-I      intronic chr20:47619380(+) A-I      intronic chr20:47619444(+) A-I      intronic chr20:47619445(+) A-I      intronic chr20:47619622(+) A-I      intronic chr20:47619928(+) A-I      intronic chr20:47619965(+) A-I      intronic chr20:47619966(+) A-I      intronic chr20:47619995(+) A-I      intronic chr20:47620015(+) A-I      intronic chr20:47623464(+) A-I      intronic chr20:47624890(+) A-I      intronic chr20:47542139(+) A-I      intronic chr20:47542294(+) A-I      intronic chr20:47543017(+) A-I      intronic chr20:47544098(+) A-I      intronic chr20:47544121(+) A-I      intronic chr20:47624894(+) A-I      intronic chr20:47624953(+) A-I      intronic chr20:47625049(+) A-I      intronic chr20:47625050(+) A-I      intronic chr20:47579544(+) A-I      intronic chr20:47583458(+) A-I      intronic chr20:47625345(+) A-I      intronic chr20:47625370(+) A-I      intronic chr20:47625371(+) A-I      intronic chr20:47625386(+) A-I      intronic chr20:47625928(+) A-I      intronic chr20:47637041(+) A-I      intronic chr20:47637180(+) A-I      intronic chr20:47638187(+) A-I      intronic chr20:47639397(+) A-I      intronic chr20:47647884(+) A-I      intronic chr20:47544174(+) A-I      intronic chr20:47544175(+) A-I      intronic chr20:47544177(+) A-I      intronic chr20:47553201(+) A-I      intronic chr20:47559122(+) A-I      intronic chr20:47559151(+) A-I      intronic chr20:47559156(+) A-I      intronic chr20:47559220(+) A-I      intronic chr20:47560131(+) A-I      intronic chr20:47560194(+) A-I      intronic chr20:47639420(+) A-I      intronic chr20:47640335(+) A-I      intronic chr20:47640336(+) A-I      intronic chr20:47640526(+) A-I      intronic chr20:47640621(+) A-I      intronic chr20:47641281(+) A-I      intronic chr20:47641372(+) A-I      intronic chr20:47641374(+) A-I      intronic chr20:47583463(+) A-I      intronic chr20:47583483(+) A-I      intronic chr20:47583611(+) A-I      intronic chr20:47584063(+) A-I      intronic chr20:47612877(+) A-I      intronic chr20:47612917(+) A-I      intronic chr20:47613166(+) A-I      intronic chr20:47613201(+) A-I      intronic chr20:47613202(+) A-I      intronic chr20:47590732(+) A-I      intronic chr20:47592218(+) A-I      intronic chr20:47592223(+) A-I      intronic chr20:47593104(+) A-I      intronic chr20:47593234(+) A-I      intronic chr20:47603090(+) A-I      intronic chr20:47603304(+) A-I      intronic chr20:47641375(+) A-I      intronic chr20:47641377(+) A-I      intronic chr20:47641439(+) A-I      intronic chr20:47642622(+) A-I      intronic chr20:47642670(+) A-I      intronic chr20:47643385(+) A-I      intronic chr20:47643391(+) A-I      intronic chr20:47644086(+) A-I      intronic chr20:47644112(+) A-I      intronic chr20:47644851(+) A-I      intronic chr20:47647409(+) A-I      intronic chr20:47647450(+) A-I      intronic chr20:47603316(+) A-I      intronic chr20:47603451(+) A-I      intronic chr20:47561280(+) A-I      intronic chr20:47583523(+) A-I      intronic chr20:47577364(+) A-I      intronic chr20:47613949(+) A-I      intronic chr20:47643702(+) A-I      intronic chr20:47563991(+) A-I      intronic chr20:47612871(+) A-I      intronic chr20:47544042(+) A-I      intronic chr20:47543161(+) A-I      intronic chr20:47568773(+) A-I      intronic chr20:47550481(+) A-I      intronic chr20:47613098(+) A-I      intronic chr20:47622034(+) A-I      intronic chr20:47614520(+) A-I      intronic chr20:47622004(+) A-I      intronic chr20:47647368(+) A-I      intronic chr20:47646656(+) A-I      intronic chr20:47550536(+) A-I      intronic chr20:47563919(+) A-I      intronic chr20:47577138(+) A-I      intronic chr20:47603464(+) A-I      intronic chr20:47567253(+) A-I      intronic chr20:47640602(+) A-I      intronic chr20:47560209(+) A-I      intronic chr20:47579475(+) A-I      intronic chr20:47578700(+) A-I      intronic chr20:47561186(+) A-I      intronic chr20:47625322(+) A-I      intronic chr20:47562183(+) A-I      intronic chr20:47616030(+) A-I      intronic chr20:47543122(+) A-I      intronic chr20:47622577(+) A-I      intronic chr20:47625519(+) A-I      intronic chr20:47561169(+) A-I      intronic chr20:47572964(+) A-I      intronic chr20:47648347(+) A-I      intronic chr20:47563667(+) A-I      intronic chr20:47625428(+) A-I      intronic chr20:47612839(+) A-I      intronic chr20:47617716(+) A-I      intronic chr20:47648394(+) A-I      intronic chr20:47579592(+) A-I      intronic chr20:47544040(+) A-I      intronic chr20:47603340(+) A-I      intronic chr20:47577178(+) A-I      intronic chr20:47646630(+) A-I      intronic chr20:47638844(+) A-I      intronic chr20:47613927(+) A-I      intronic chr20:47576418(+) A-I      intronic chr20:47555641(+) A-I      intronic chr20:47543129(+) A-I      intronic chr20:47572382(+) A-I      intronic chr20:47646649(+) A-I      intronic chr20:47576227(+) A-I      intronic chr20:47579543(+) A-I      intronic chr20:47576170(+) A-I      intronic chr20:47542227(+) A-I      intronic chr20:47647454(+) A-I      intronic chr20:47613096(+) A-I      intronic chr20:47621176(+) A-I      intronic chr20:47579496(+) A-I      intronic chr20:47637006(+) A-I      intronic chr20:47561222(+) A-I      intronic chr20:47602970(+) A-I      intronic chr20:47643333(+) A-I      intronic chr20:47550492(+) A-I      intronic chr20:47643240(+) A-I      intronic chr20:47579580(+) A-I      intronic chr20:47637244(+) A-I      intronic chr20:47559102(+) A-I      intronic chr20:47613206(+) A-I      intronic chr20:47619308(+) A-I      intronic chr20:47613846(+) A-I      intronic chr20:47550503(+) A-I      intronic chr20:47622569(+) A-I      intronic chr20:47619417(+) A-I      intronic chr20:47603349(+) A-I      intronic chr20:47637218(+) A-I      intronic chr20:47637245(+) A-I      intronic chr20:47576178(+) A-I      intronic chr20:47619435(+) A-I      intronic chr20:47647478(+) A-I      intronic chr20:47579569(+) A-I      intronic chr20:47646612(+) A-I      intronic chr20:47648338(+) A-I      intronic chr20:47619248(+) A-I      intronic chr20:47562231(+) A-I      intronic chr20:47563451(+) A-I      intronic chr20:47579658(+) A-I      intronic chr20:47563356(+) A-I      intronic chr20:47576412(+) A-I      intronic chr20:47577121(+) A-I      intronic chr20:47562164(+) A-I      intronic chr20:47542270(+) A-I      intronic chr20:47576346(+) A-I      intronic chr20:47614580(+) A-I      intronic chr20:47647367(+) A-I      intronic chr20:47637168(+) A-I      intronic chr20:47622014(+) A-I      intronic chr20:47637192(+) A-I      intronic chr20:47584060(+) A-I      intronic chr20:47648290(+) A-I      intronic chr20:47576357(+) A-I      intronic chr20:47559178(+) A-I      intronic chr20:47579585(+) A-I      intronic chr20:47616031(+) A-I      intronic chr20:47638123(+) A-I      intronic chr20:47563188(+) A-I      intronic chr20:47648374(+) A-I      intronic chr20:47647866(+) A-I      intronic chr20:47543137(+) A-I      intronic chr20:47577114(+) A-I      intronic chr20:47648443(+) A-I      intronic chr20:47559223(+) A-I      intronic chr20:47550402(+) A-I      intronic chr20:47638613(+) A-I      intronic chr20:47576217(+) A-I      intronic chr20:47620031(+) A-I      intronic chr20:47567202(+) A-I      intronic chr20:47578727(+) A-I      intronic chr20:47614012(+) A-I      intronic chr20:47637100(+) A-I      intronic chr20:47576391(+) A-I      intronic chr20:47648306(+) A-I      intronic chr20:47602956(+) A-I      intronic chr20:47577496(+) A-I      intronic chr20:47637082(+) A-I      intronic chr20:47563814(+) A-I      intronic chr20:47647969(+) A-I      intronic chr20:47576320(+) A-I      intronic chr20:47543065(+) A-I      intronic chr20:47577259(+) A-I      intronic chr20:47641357(+) A-I      intronic chr20:47625425(+) A-I      intronic chr20:47543125(+) A-I      intronic chr20:47576247(+) A-I      intronic chr20:47562294(+) A-I      intronic chr20:47567226(+) A-I      intronic chr20:47577095(+) A-I      intronic chr20:47643295(+) A-I      intronic chr20:47617656(+) A-I      intronic chr20:47543135(+) A-I      intronic chr20:47619582(+) A-I      intronic chr20:47544025(+) A-I      intronic chr20:47541001(+) A-I      intronic chr20:47640540(+) A-I      intronic chr20:47559167(+) A-I      intronic chr20:47648220(+) A-I      intronic chr20:47643654(+) A-I      intronic chr20:47576390(+) A-I      intronic chr20:47602911(+) A-I      intronic chr20:47576385(+) A-I      intronic chr20:47647319(+) A-I      intronic chr20:47563180(+) A-I      intronic chr20:47602965(+) A-I      intronic chr20:47647953(+) A-I      intronic chr20:47622088(+) A-I      intronic chr20:47612828(+) A-I      intronic chr20:47617851(+) A-I      intronic chr20:47555692(+) A-I      intronic chr20:47647846(+) A-I      intronic chr20:47643320(+) A-I      intronic chr20:47624979(+) A-I      intronic chr20:47561110(+) A-I      intronic chr20:47637157(+) A-I      intronic chr20:47624993(+) A-I      intronic chr20:47615611(+) A-I      intronic chr20:47643309(+) A-I      intronic chr20:47576347(+) A-I      intronic chr20:47577247(+) A-I      intronic chr20:47638206(+) A-I      intronic chr20:47563816(+) A-I      intronic chr20:47542213(+) A-I      intronic chr20:47623888(+) A-I      intronic chr20:47613939(+) A-I      intronic chr20:47563839(+) A-I      intronic chr20:47564129(+) A-I      intronic chr20:47563311(+) A-I      intronic chr20:47625480(+) A-I      intronic chr20:47638607(+) A-I      intronic chr20:47641368(+) A-I      intronic chr20:47638201(+) A-I      intronic chr20:47647932(+) A-I      intronic chr20:47647867(+) A-I      intronic chr20:47625381(+) A-I      intronic chr20:47542349(+) A-I      intronic chr20:47612830(+) A-I      intronic chr20:47619281(+) A-I      intronic chr20:47619145(+) A-I      intronic chr20:47613193(+) A-I      intronic chr20:47563438(+) A-I      intronic chr20:47648298(+) A-I      intronic chr20:47624886(+) A-I      intronic chr20:47592070(+) A-I      intronic chr20:47563443(+) A-I      intronic chr20:47588426(+) A-I      intronic chr20:47562232(+) A-I      intronic chr20:47637148(+) A-I      intronic chr20:47540769(+) A-I      intronic chr20:47562178(+) A-I      intronic chr20:47563408(+) A-I      intronic chr20:47578610(+) A-I      intronic chr20:47619385(+) A-I      intronic chr20:47613910(+) A-I      intronic chr20:47563305(+) A-I      intronic chr20:47647836(+) A-I      intronic chr20:47617622(+) A-I      intronic chr20:47647318(+) A-I      intronic chr20:47619372(+) A-I      intronic chr20:47619457(+) A-I      intronic chr20:47648191(+) A-I      intronic chr20:47562146(+) A-I      intronic chr20:47614072(+) A-I      intronic chr20:47563986(+) A-I      intronic chr20:47646949(+) A-I      intronic chr20:47648215(+) A-I      intronic chr20:47637152(+) A-I      intronic chr20:47603470(+) A-I      intronic chr20:47625929(+) A-I      intronic chr20:47613160(+) A-I      intronic chr20:47642639(+) A-I      intronic chr20:47579594(+) A-I      intronic chr20:47619275(+) A-I      intronic chr20:47579657(+) A-I      intronic chr20:47577082(+) A-I      intronic chr20:47648242(+) A-I      intronic chr20:47561115(+) A-I      intronic chr20:47577294(+) A-I      intronic chr20:47648292(+) A-I      intronic chr20:47612809(+) A-I      intronic chr20:47583485(+) A-I      intronic chr20:47543100(+) A-I      intronic chr20:47542253(+) A-I      intronic chr20:47579531(+) A-I      intronic chr20:47603364(+) A-I      intronic chr20:47638282(+) A-I      intronic chr20:47625309(+) A-I      intronic chr20:47619249(+) A-I      intronic chr20:47612785(+) A-I      intronic chr20:47647479(+) A-I      intronic chr20:47585509(+) A-I      intronic chr20:47579638(+) A-I      intronic chr20:47577120(+) A-I      intronic chr20:47625308(+) A-I      intronic chr20:47637036(+) A-I      intronic chr20:47647386(+) A-I      intronic chr20:47647831(+) A-I      intronic chr20:47576351(+) A-I      intronic chr20:47648401(+) A-I      intronic chr20:47643306(+) A-I      intronic chr20:47579591(+) A-I      intronic chr20:47542202(+) A-I      intronic chr20:47553162(+) A-I      intronic chr20:47572450(+) A-I      intronic chr20:47614597(+) A-I      intronic chr20:47550501(+) A-I      intronic chr20:47637062(+) A-I      intronic chr20:47561098(+) A-I      intronic chr20:47638130(+) A-I      intronic chr20:47563678(+) A-I      intronic chr20:47637677(+) A-I      intronic chr20:47625298(+) A-I      intronic chr20:47550401(+) A-I      intronic chr20:47642788(+) A-I      intronic chr20:47542299(+) A-I      intronic chr20:47618641(+) A-I      intronic chr20:47563777(+) A-I      intronic chr20:47647967(+) A-I      intronic chr20:47562290(+) A-I      intronic chr20:47577390(+) A-I      intronic chr20:47643831(+) A-I      intronic chr20:47612781(+) A-I      intronic chr20:47613231(+) A-I      intronic chr20:47562384(+) A-I      intronic chr20:47563843(+) A-I      intronic chr20:47638465(+) A-I      intronic chr20:47648250(+) A-I      intronic chr20:47563852(+) A-I      intronic chr20:47579554(+) A-I      intronic chr20:47648198(+) A-I      intronic chr20:47619363(+) A-I      intronic chr20:47647928(+) A-I      intronic chr20:47614459(+) A-I      intronic chr20:47577263(+) A-I      intronic chr20:47542326(+) A-I      intronic chr20:47613068(+) A-I      intronic chr20:47543970(+) A-I      intronic chr20:47622098(+) A-I      intronic chr20:47638275(+) A-I      intronic chr20:47648442(+) A-I      intronic chr20:47577282(+) A-I      intronic chr20:47592259(+) A-I      intronic chr20:47614536(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ARFGEF2	chr20:47622034(+) A-I intron -    15258596 chr20:47622088(+) A-I intron -    15258596 chr20:47622098(+) A-I intron -    15258596 chr20:47622569(+) A-I intron -    15545495 chr20:47622577(+) A-I intron -    15545495 chr20:47622578(+) A-I intron -    15545495 chr20:47543970(+) A-I intron -    22327324 chr20:47543971(+) A-I intron -    22327324 chr20:47613161(+) A-I intron -    22327324 chr20:47539207(+) A-I intron -    21960545 chr20:47543095(+) A-I intron -    21960545 chr20:47560185(+) A-I intron -    21960545 chr20:47579580(+) A-I intron -    21960545 chr20:47583417(+) A-I intron -    21960545 chr20:47542202(+) A-G intron -    22484847 chr20:47542227(+) A-G intron -    22484847 chr20:47542240(+) A-G intron -    22484847 chr20:47542253(+) A-G intron -    22484847 chr20:47542295(+) A-G intron -    22484847 chr20:47543970(+) A-G intron -    22484847 chr20:47543971(+) A-G intron -    22484847 chr20:47576347(+) A-G intron -    22484847 chr20:47576390(+) A-G intron -    22484847 chr20:47578610(+) A-G intron -    22484847 chr20:47578727(+) A-G intron -    22484847 chr20:47579554(+) A-G intron -    22484847 chr20:47579580(+) A-G intron -    22484847 chr20:47612809(+) A-G intron -    22484847 chr20:47612871(+) A-G intron -    22484847 chr20:47613160(+) A-G intron -    22484847 chr20:47613161(+) A-G intron -    22484847 chr20:47637192(+) A-G intron -    22484847 chr20:47647318(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARFGEF2	chr20:47570109-47570110(+) m6A CDS       24981863 chr20:47570118-47570119(+) m6A CDS       24981863 chr20:47570133-47570134(+) m6A CDS       24981863 chr20:47570211-47570212(+) m6A CDS       24981863 chr20:47570230-47570231(+) m6A CDS       24981863 chr20:47570250-47570251(+) m6A CDS       24981863 chr20:47580368-47580369(+) m6A CDS       24981863 chr20:47580399-47580400(+) m6A CDS       24981863 chr20:47582436-47582437(+) m6A CDS       24981863 chr20:47591375-47591376(+) m6A CDS       - chr20:47591401-47591402(+) m6A CDS       - chr20:47592653-47592654(+) m6A CDS       - chr20:47592659-47592660(+) m6A CDS       - chr20:47592721-47592722(+) m6A CDS       - chr20:47601277-47601278(+) m6A CDS       - chr20:47602058-47602059(+) Y CDS       26075521 chr20:47604908-47604909(+) m6A CDS       27773535 chr20:47605159-47605160(+) m6A CDS       24981863//27773535 chr20:47611032-47611033(+) m6A CDS       22575960 chr20:47612350-47612351(+) m6A CDS       22575960 chr20:47626899-47626900(+) m6A CDS       - chr20:47626922-47626923(+) m6A CDS       - chr20:47649822-47649823(+) m6A 3'UTR       24284625//24981863//22608085 chr20:47649922-47649923(+) m6A 3'UTR       24284625//24981863//22608085 chr20:47649994-47649995(+) m6A 3'UTR       24284625//24981863//22608085 chr20:47652123-47652124(+) m6A 3'UTR       - chr20:47652165-47652166(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARFGEF2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-6-3p
Interactor2: ARFGEF2

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg