Detail Information

Basic Information:


  VIRBase ID:  

VHID00455312

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-3p:           CPNE1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-6-3p CPNE1
miRBase
Accession/Entrez ID		 MIMAT0002189 8904
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - COPN1//CPN1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CPNE1
chr20:34248307(-) A-I      intronic
chr20:34248312(-) A-I      intronic
chr20:34227391(-) A-I      intronic
chr20:34217797(-) A-I      intronic
chr20:34217752(-) A-I      intronic
chr20:34217740(-) A-I      intronic
chr20:34218209(-) A-I      intronic
chr20:34214851(-) A-I      intronic
chr20:34234388(-) A-I      intronic
chr20:34234418(-) A-I      intronic
chr20:34235924(-) A-I      intronic
chr20:34214865(-) A-I      intronic
chr20:34217832(-) A-I      intronic
chr20:34217856(-) A-I      intronic
chr20:34217857(-) A-I      intronic
chr20:34218004(-) A-I      intronic
chr20:34217813(-) A-I      intronic
chr20:34221709(-) A-I      intronic
chr20:34222359(-) A-I      intronic
chr20:34222429(-) A-I      intronic
chr20:34222434(-) A-I      intronic
chr20:34214875(-) A-I      intronic
chr20:34214892(-) A-I      intronic
chr20:34214906(-) A-I      intronic
chr20:34214966(-) A-I      intronic
chr20:34214986(-) A-I      intronic
chr20:34214998(-) A-I      intronic
chr20:34215010(-) A-I      intronic
chr20:34215088(-) A-I      intronic
chr20:34215846(-) A-I      intronic
chr20:34217601(-) A-I      intronic
chr20:34217637(-) A-I      intronic
chr20:34217734(-) A-I      intronic
chr20:34234368(-) A-I      intronic
chr20:34227440(-) A-I      intronic
chr20:34227407(-) A-I      intronic
chr20:34227351(-) A-I      intronic
chr20:34227337(-) A-I      intronic
chr20:34222447(-) A-I      intronic
chr20:34217751(-) A-I      intronic
chr20:34218116(-) A-I      intronic
chr20:34234417(-) A-I      intronic
chr20:34222721(-) A-I      intronic
chr20:34215023(-) A-I      intronic
chr20:34218094(-) A-I      intronic
chr20:34234401(-) A-I      intronic
chr20:34218130(-) A-I      intronic
chr20:34222440(-) A-I      intronic
chr20:34218211(-) A-I      intronic
chr20:34221733(-) A-I      intronic
chr20:34217831(-) A-I      intronic
chr20:34217757(-) A-I      intronic
chr20:34217705(-) A-I      intronic
chr20:34244631(-) A-I      intronic
chr20:34222713(-) A-I      intronic
chr20:34248397(-) A-I      intronic
chr20:34217794(-) A-I      intronic
chr20:34227373(-) A-I      intronic
chr20:34231417(-) A-I      intronic
chr20:34215001(-) A-I      intronic
chr20:34227461(-) A-I      intronic
chr20:34235720(-) A-I      intronic
chr20:34215027(-) A-I      intronic
chr20:34217784(-) A-I      intronic
chr20:34217774(-) A-I      intronic
chr20:34222480(-) A-I      intronic
chr20:34222829(-) A-I      intronic
chr20:34217879(-) A-I      intronic
chr20:34217729(-) A-I      intronic
chr20:34248368(-) A-I      intronic
chr20:34227530(-) A-I      intronic
chr20:34227539(-) A-I      intronic
chr20:34218092(-) A-I      intronic
chr20:34215047(-) A-I      intronic
chr20:34222350(-) A-I      intronic
chr20:34218212(-) A-I      intronic
chr20:34222865(-) A-I      intronic
chr20:34218104(-) A-I      intronic
chr20:34217759(-) A-I      intronic
chr20:34222826(-) A-I      intronic
chr20:34235747(-) A-I      intronic
chr20:34214955(-) A-I      intronic
chr20:34222469(-) A-I      intronic
chr20:34214962(-) A-I      intronic
chr20:34217673(-) A-I      intronic
chr20:34217760(-) A-I      intronic
chr20:34217775(-) A-I      intronic
chr20:34218050(-) A-I      intronic
chr20:34248231(-) A-I      intronic
chr20:34217745(-) A-I      intronic
chr20:34227423(-) A-I      intronic
chr20:34227466(-) A-I      intronic
chr20:34248334(-) A-I      intronic
chr20:34218067(-) A-I      intronic
chr20:34217719(-) A-I      intronic
chr20:34222916(-) A-I      intronic
chr20:34217678(-) A-I      intronic
chr20:34244528(-) A-I      intronic
chr20:34221712(-) A-I      intronic
chr20:34217776(-) A-I      intronic
chr20:34227324(-) A-I      intronic
chr20:34217999(-) A-I      intronic
chr20:34222794(-) A-I      intronic
chr20:34246599(-) A-I      intronic
chr20:34235809(-) A-I      intronic
chr20:34218129(-) A-I      intronic
chr20:34217683(-) A-I      intronic
chr20:34222353(-) A-I      intronic
chr20:34217808(-) A-I      intronic
chr20:34217957(-) A-I      intronic
chr20:34235925(-) A-I      intronic
chr20:34217758(-) A-I      intronic
chr20:34235812(-) A-I      intronic
chr20:34233920(-) A-I      intronic
chr20:34234395(-) A-I      intronic
chr20:34244594(-) A-I      intronic
chr20:34234385(-) A-I      intronic
chr20:34217837(-) A-I      intronic
chr20:34217709(-) A-I      intronic
chr20:34246670(-) A-I      intronic
chr20:34227396(-) A-I      intronic
chr20:34215850(-) A-I      intronic
chr20:34222838(-) A-I      intronic
chr20:34218107(-) A-I      intronic
chr20:34222061(-) A-I      intronic
chr20:34217629(-) A-I      intronic
chr20:34218068(-) A-I      intronic
chr20:34227364(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CPNE1
chr20:34217719(-) A-I intron -    21960545   //22327324
chr20:34217745(-) A-I intron -    21960545   //22327324
chr20:34217758(-) A-I intron -    22327324
chr20:34217957(-) A-I intron -    21960545   //22327324
chr20:34218094(-) A-I intron -    21960545   //22327324
chr20:34218165(-) A-I intron -    21960545   //22327324
chr20:34218212(-) A-I intron -    21960545   //22327324
chr20:34222721(-) A-I intron -    22327324
chr20:34217683(-) A-I intron -    21960545
chr20:34217705(-) A-I intron -    21960545
chr20:34217879(-) A-I intron -    21960545
chr20:34217999(-) A-I intron -    21960545
chr20:34215027(-) A-G intron -    22484847
chr20:34217709(-) A-G intron -    22484847
chr20:34217719(-) A-G intron -    22484847
chr20:34217745(-) A-G intron -    22484847
chr20:34217749(-) A-G intron -    22484847
chr20:34217750(-) A-G intron -    22484847
chr20:34217758(-) A-G intron -    22484847
chr20:34217759(-) A-G intron -    22484847
chr20:34217775(-) A-G intron -    22484847
chr20:34217786(-) A-G intron -    22484847
chr20:34217831(-) A-G intron -    22484847
chr20:34217957(-) A-G intron -    22484847
chr20:34217999(-) A-G intron -    22484847
chr20:34218053(-) A-G intron -    22484847
chr20:34218067(-) A-G intron -    22484847
chr20:34218092(-) A-G intron -    22484847
chr20:34218094(-) A-G intron -    22484847
chr20:34218107(-) A-G intron -    22484847
chr20:34218108(-) A-G intron -    22484847
chr20:34218129(-) A-G intron -    22484847
chr20:34218130(-) A-G intron -    22484847
chr20:34218165(-) A-G intron -    22484847
chr20:34218212(-) A-G intron -    22484847
chr20:34222721(-) A-G intron -    22484847
chr20:34222746(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CPNE1
chr20:34213969-34213970(-) m6A 3'UTR//exon       27773535
chr20:34213979-34213980(-) m6A 3'UTR//exon       27773535
chr20:34214278-34214279(-) m6A 3'UTR//CDS//exon       27773535
chr20:34214353-34214354(-) m6A exon//intron       27773535
chr20:34214684-34214685(-) Cm 3'UTR//CDS//exon       -
chr20:34215209-34215210(-) m6A CDS//exon       27773535
chr20:34215391-34215392(-) m6A exon//intron       27773535
chr20:34218436-34218437(-) m6A exon//intron       27773535
chr20:34220441-34220442(-) m6A CDS//exon       26404942
chr20:34220502-34220503(-) m6A CDS//exon       26404942
chr20:34220783-34220784(-) m6A CDS//exon       24284625//24209618//27371828//22575960//22608085
chr20:34227971-34227972(-) Cm intron       -
chr20:34240025-34240026(-) m6A intron       24981863//22608085
chr20:34240097-34240098(-) m6A intron       25456834//24981863//26404942//22608085
chr20:34240186-34240187(-) m6A intron       24981863//26404942//22608085
chr20:34240198-34240199(-) m6A intron       24981863//26404942//22608085
chr20:34240231-34240232(-) m6A intron       26404942//22608085
chr20:34240268-34240269(-) m6A intron       22608085
chr20:34240294-34240295(-) Y intron       25219674
chr20:34240914-34240915(-) m6A intron       24981863//22608085
chr20:34240919-34240920(-) m6A intron       24981863//22608085
chr20:34240946-34240947(-) m6A intron       24284625//24981863//22608085
chr20:34240968-34240969(-) m6A intron       24284625//24981863//22608085
chr20:34241186-34241187(-) m6A intron       24284625//24981863//22608085
chr20:34241216-34241217(-) m6A intron       24284625//24981863//27773535//22608085
chr20:34241246-34241247(-) m6A intron       24284625//24981863//27773535//22608085
chr20:34241261-34241262(-) m6A intron       24284625//24981863//27773535//22608085
chr20:34241276-34241277(-) m6A intron       24284625//24981863//27773535//22608085
chr20:34241420-34241421(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:34241486-34241487(-) m6A 5'UTR//intron       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr20:34241676-34241677(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:34241684-34241685(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:34241768-34241769(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:34241849-34241850(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:34241916-34241917(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:34242025-34242026(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:34242047-34242048(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:34242056-34242057(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:34242104-34242105(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:34242156-34242157(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:34242378-34242379(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:34242438-34242439(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:34242696-34242697(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:34242775-34242776(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:34242799-34242800(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:34242807-34242808(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:34242891-34242892(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:34242926-34242927(-) m6A intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:34242970-34242971(-) m6A intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr20:34242992-34242993(-) m6A intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr20:34243127-34243128(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:34243191-34243192(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:34243198-34243199(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:34252360-34252361(-) m6A 5'UTR//exon//intron       24284625//24981863
chr20:34252372-34252373(-) m6A 5'UTR//exon//intron       24284625
chr20:34252675-34252676(-) m6A exon//intron       24284625//24209618//25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CPNE1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|HeLa-S3 cells     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-6-3p
Interactor2: CPNE1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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