Detail Information

Basic Information:


  VIRBase ID:  

VHID00454842

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-3p:           NCL:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-6-3p NCL
miRBase
Accession/Entrez ID		 MIMAT0002189 4691
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - C23//Nsr1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NCL
chr2:232324286(-) A-I      intronic
chr2:232318891(-) A-I      3'UTR
chr2:232324297(-) A-I      intronic
chr2:232324268(-) A-I      intronic
chr2:232324352(-) A-I      intronic
chr2:232324316(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NCL
chr2:232324286(-) A-G intron -    22484847
chr2:232324572(-) A-G intron -    22484847
chr2:232324582(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NCL
chr2:232319486-232319487(-) m6A 3'UTR       27773535
chr2:232319632-232319633(-) m6A 3'UTR//exon       27773535
chr2:232319710-232319711(-) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085
chr2:232319801-232319802(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr2:232319811-232319812(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:232319859-232319860(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:232320229-232320230(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960
chr2:232320239-232320240(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960
chr2:232320313-232320314(-) Cm CDS//exon       -
chr2:232320320-232320321(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960
chr2:232320563-232320564(-) Y intron       25192136
chr2:232320593-232320594(-) Gm intron       -
chr2:232320736-232320737(-) m6A CDS//exon       24284625//24209618//26404942//27773535//22575960
chr2:232320793-232320794(-) m6A CDS//exon       24284625//24209618//26404942//27773535//22575960
chr2:232320835-232320836(-) m6A CDS//exon       24284625//26404942//27773535
chr2:232321201-232321202(-) Tm intron       -
chr2:232321369-232321370(-) m6A CDS//exon       24284625//26404942//27773535
chr2:232321732-232321733(-) m6A CDS//exon       27773535
chr2:232322307-232322308(-) m6A exon//intron       -
chr2:232322385-232322386(-) m6A CDS//exon       24981863//27773535//22575960
chr2:232322446-232322447(-) m6A CDS//exon       24981863//27773535//22575960
chr2:232322467-232322468(-) m6A CDS//exon       24981863//27773535//22575960
chr2:232322488-232322489(-) m6A CDS//exon       24981863//27773535//22575960
chr2:232323085-232323086(-) m6A CDS//exon       24981863//27773535//22575960
chr2:232323666-232323667(-) m6A exon//intron       22575960
chr2:232323679-232323680(-) m6A exon//intron       22575960
chr2:232323722-232323723(-) m6A CDS//exon       25456834//22575960
chr2:232323736-232323737(-) m6A CDS//exon       25456834//22575960
chr2:232323745-232323746(-) m6A CDS//exon       25456834//22575960
chr2:232323779-232323780(-) Tm CDS//exon       -
chr2:232323781-232323782(-) m6A CDS//exon       22575960
chr2:232323800-232323801(-) m6A CDS//exon       22575960
chr2:232324929-232324930(-) m6A CDS//exon       26404942//27773535//22575960
chr2:232324958-232324959(-) m6A CDS//exon       24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960
chr2:232324964-232324965(-) m6A CDS//exon       24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960
chr2:232324996-232324997(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960
chr2:232325088-232325089(-) Tm intron       -
chr2:232325112-232325113(-) m6A intron       26404942
chr2:232325125-232325126(-) m6A intron       26404942
chr2:232325201-232325202(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:232325228-232325229(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:232325393-232325394(-) m1A CDS//exon       26863196
chr2:232325474-232325475(-) m1A CDS//exon       26863196
chr2:232325483-232325484(-) Am CDS//exon       -
chr2:232325553-232325554(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr2:232325567-232325568(-) m1A CDS//exon       26863196
chr2:232326285-232326286(-) Am CDS//exon       -
chr2:232326350-232326351(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr2:232326432-232326433(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr2:232326574-232326575(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//27773536//22575960
chr2:232327852-232327853(-) m6A exon//intron       24981863//22575960
chr2:232327873-232327874(-) m6A exon//intron       24981863//22575960
chr2:232327932-232327933(-) m1A CDS//exon       26863196//26863410
chr2:232327968-232327969(-) m1A CDS//exon       26863196//26863410
chr2:232328316-232328317(-) m6A 5'UTR//intron       24284625//24981863//27773535//27371828//22575960
chr2:232328738-232328739(-) m6A 5'UTR//intron       27371828
chr2:232328763-232328764(-) m6A 5'UTR//intron       27371828
chr2:232328768-232328769(-) m6A 5'UTR//intron       27371828
chr2:232328822-232328823(-) m6A 5'UTR//intron       27371828//22575960
chr2:232329105-232329106(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr2:232347445-232347446(-) m6A exon       -
chr2:232347540-232347541(-) m6A exon       -
chr2:232347577-232347578(-) m6A exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NCL
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-6-3p
Interactor2: NCL

Evidence Support:


Prediction-Evidence cRep//miRanda
Support Database RepTar//VmiReg

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