Basic Information:

  VIRBase ID:  

VHID00454687

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-3p:  MIMAT0002189          FOXA1:  NM_004496     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-6-3p	FOXA1
miRBase Accession/Entrez ID	MIMAT0002189	3169
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HNF3A//TCF3A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FOXA1	chr14:38059215-38059216(-) m6A 3'UTR       27773535 chr14:38060084-38060085(-) m6A 3'UTR       27773535 chr14:38060212-38060213(-) m6A 3'UTR       24981863//27773535 chr14:38060244-38060245(-) m6A 3'UTR       24981863//27773535 chr14:38060343-38060344(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr14:38060353-38060354(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr14:38060404-38060405(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr14:38060482-38060483(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr14:38060487-38060488(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr14:38060496-38060497(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr14:38060501-38060502(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr14:38060560-38060561(-) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085 chr14:38060579-38060580(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38060590-38060591(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38060725-38060726(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr14:38060741-38060742(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr14:38060816-38060817(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38060937-38060938(-) m6A CDS//exon       24284625//24981863//27773535//27773536//22575960//22608085 chr14:38060981-38060982(-) m6A CDS//exon       25456834//24981863//27773536//22575960//22608085 chr14:38060988-38060989(-) m6A CDS//exon       25456834//24981863//27773536//22575960//22608085 chr14:38061039-38061040(-) m6A CDS//exon       25456834//24981863//27773536//22575960//22608085 chr14:38061101-38061102(-) m6A CDS//exon       25456834//24981863//27773536//22575960//22608085 chr14:38061242-38061243(-) m6A CDS//exon       24284625//24981863//27773536//22575960//22608085 chr14:38061281-38061282(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38061341-38061342(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38061359-38061360(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38061383-38061384(-) m6A CDS//exon       24284625//24981863//27773535//27773536//22575960//22608085 chr14:38061584-38061585(-) m6A CDS//exon       24981863//27773536//22575960//22608085 chr14:38061707-38061708(-) m6A CDS//exon       25456834//24981863//27773536//22575960//22608085 chr14:38061836-38061837(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38061854-38061855(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38061863-38061864(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22575960//22608085 chr14:38061884-38061885(-) m6A 3'UTR//CDS//exon       24981863//27773535//22575960//22608085 chr14:38063083-38063084(-) m6A exon//intron       24981863//27773535//22608085 chr14:38063255-38063256(-) m6A exon//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FOXA1	Exosome Blood     - Membrane HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-6-3p
Interactor2: FOXA1

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg