Basic Information:

  VIRBase ID:  

VHID00452643

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-5p:  MIMAT0002188          ATXN7L3:  NM_001382309     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-6-5p	ATXN7L3
miRBase Accession/Entrez ID	MIMAT0002188	56970
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SGF11

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATXN7L3	chr17:42269190-42269191(-) m6A 3'UTR       27773535 chr17:42270108-42270109(-) m6A 3'UTR       24284625//25456834//24981863//22608085 chr17:42270142-42270143(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085 chr17:42270161-42270162(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085 chr17:42270177-42270178(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr17:42270186-42270187(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr17:42270247-42270248(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr17:42270325-42270326(-) m6A 3'UTR       24284625//27371828//22608085 chr17:42270426-42270427(-) m6A 3'UTR       24284625 chr17:42271050-42271051(-) m6A 3'UTR       24284625 chr17:42271276-42271277(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr17:42271281-42271282(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr17:42271400-42271401(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr17:42271416-42271417(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr17:42271422-42271423(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr17:42271428-42271429(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr17:42271716-42271717(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr17:42271752-42271753(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr17:42272166-42272167(-) m6A CDS//exon       27773535 chr17:42272233-42272234(-) m6A exon//intron       27773535 chr17:42273411-42273412(-) m6A 5'UTR//CDS//exon//intron       24981863//27773535 chr17:42273445-42273446(-) m6A 5'UTR//CDS//exon//intron       24981863//27773535 chr17:42273578-42273579(-) m6A exon//intron       24981863 chr17:42273767-42273768(-) m6A CDS//intron       24981863 chr17:42274619-42274620(-) m6A CDS//intron       24284625//24981863 chr17:42274732-42274733(-) m6A CDS//intron       24284625//24981863//22575960 chr17:42274742-42274743(-) m6A CDS//intron       24284625//24981863//27773535//22575960 chr17:42274757-42274758(-) m6A CDS//intron       24284625//24981863//27773535//22575960 chr17:42274988-42274989(-) m6A CDS//intron       24284625//24981863//27773535//22575960 chr17:42275072-42275073(-) m6A CDS//intron       24284625//24209618//24981863//27773535 chr17:42275393-42275394(-) m6A CDS//intron       24284625//24209618//27773535 chr17:42275531-42275532(-) m6A 5'UTR//intron       24209618//27371828 chr17:42275589-42275590(-) m6A 5'UTR//intron       25456834//24981863//27371828 chr17:42275603-42275604(-) m6A 5'UTR//intron       25456834//24981863//27371828 chr17:42275635-42275636(-) m6A 5'UTR//intron       25456834//27371828 chr17:42275644-42275645(-) m6A 5'UTR//intron       27371828 chr17:42275677-42275678(-) m6A 5'UTR//intron       27371828 chr17:42276564-42276565(-) m6A 5'UTR//intron       24209618 chr17:42276954-42276955(-) m6A 5'UTR//intron       24209618//27773536 chr17:42276962-42276963(-) m6A 5'UTR//intron       24209618//27773536 chr17:42277070-42277071(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828//27773536 chr17:42277116-42277117(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATXN7L3	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	kshv-miR-K12-6-5p	l-685,458       5479543

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-6-5p
Interactor2: ATXN7L3

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg