Basic Information:

  VIRBase ID:  

VHID00452268

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-5p:  MIMAT0002188          CHST15:  NM_001270764     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-6-5p	CHST15
miRBase Accession/Entrez ID	MIMAT0002188	51363
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BRAG//GALNAC4S-6ST

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CHST15	chr10:125782515(-) A-I      intronic chr10:125782509(-) A-I      intronic chr10:125841673(-) A-I      intronic chr10:125782498(-) A-I      intronic chr10:125840354(-) A-I      intronic chr10:125782957(-) A-I      intronic chr10:125782503(-) A-I      intronic chr10:125782506(-) A-I      intronic chr10:125782524(-) A-I      intronic chr10:125813165(-) A-I      intronic chr10:125822817(-) A-I      intronic chr10:125810575(-) A-I      intronic chr10:125782581(-) A-I      intronic chr10:125810591(-) A-I      intronic chr10:125782518(-) A-I      intronic chr10:125782447(-) A-I      intronic chr10:125830179(-) A-I      intronic chr10:125782906(-) A-I      intronic chr10:125822830(-) A-I      intronic chr10:125782790(-) A-I      intronic chr10:125782444(-) A-I      intronic chr10:125782555(-) A-I      intronic chr10:125782891(-) A-I      intronic chr10:125822816(-) A-I      intronic chr10:125840327(-) A-I      intronic chr10:125812307(-) A-I      intronic chr10:125782471(-) A-I      intronic chr10:125810596(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHST15	chr10:125767787-125767788(-) m6A 3'UTR       27773535 chr10:125768004-125768005(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:125768020-125768021(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:125768108-125768109(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:125768192-125768193(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:125768277-125768278(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:125768327-125768328(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:125768515-125768516(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr10:125768533-125768534(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr10:125768562-125768563(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085 chr10:125768684-125768685(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr10:125768745-125768746(-) m6A 3'UTR       24981863//22608085 chr10:125768813-125768814(-) m6A 3'UTR       24981863//27773535//22608085 chr10:125768878-125768879(-) m6A 3'UTR       24981863//27773535//22608085 chr10:125768883-125768884(-) m6A 3'UTR       24981863//27773535//22608085 chr10:125768918-125768919(-) m6A 3'UTR       24981863//27773535//22608085 chr10:125769013-125769014(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr10:125769042-125769043(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr10:125769097-125769098(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125769104-125769105(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125769136-125769137(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr10:125769194-125769195(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125769254-125769255(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125769355-125769356(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125769442-125769443(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125769479-125769480(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125769555-125769556(-) m6A 3'UTR       24284625//24981863//22575960//22608085 chr10:125769563-125769564(-) m6A 3'UTR       24284625//24981863//22575960//22608085 chr10:125769587-125769588(-) m6A 3'UTR       24284625//24981863//22608085 chr10:125804358-125804359(-) m6A CDS       24981863//27773535 chr10:125804400-125804401(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:125805204-125805205(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:125805213-125805214(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:125805224-125805225(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:125805285-125805286(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:125805348-125805349(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:125805357-125805358(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:125805473-125805474(-) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr10:125805528-125805529(-) m6A CDS       24284625//25456834//24981863//27773535//27773536//22608085 chr10:125805544-125805545(-) m6A CDS       24284625//25456834//24981863//27773535//27773536//22608085 chr10:125805570-125805571(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:125805585-125805586(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chr10:125805606-125805607(-) m6A CDS       24284625//25456834//24981863//27773536//22608085 chr10:125805786-125805787(-) m6A 5'UTR       24284625//24981863//22608085 chr10:125805794-125805795(-) m6A 5'UTR       24284625//24981863//27773535//22608085 chr10:125805915-125805916(-) m6A 5'UTR       24284625//25456834//24981863//27773535//22608085 chr10:125805948-125805949(-) m6A 5'UTR       24284625//25456834//24981863//27773535//22608085 chr10:125805961-125805962(-) m6A 5'UTR       24284625//25456834//24981863//27773535//22608085 chr10:125806000-125806001(-) m6A 5'UTR       24284625//25456834//24981863//27773535//22608085 chr10:125806029-125806030(-) m6A 5'UTR       24284625//25456834//24981863//22608085 chr10:125806110-125806111(-) m6A 5'UTR       24284625//24981863//22608085 chr10:125852998-125852999(-) m6A 5'UTR       24981863 chr10:125853111-125853112(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CHST15	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	kshv-miR-K12-6-5p	l-685,458       5479543

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-6-5p
Interactor2: CHST15

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg