Basic Information:

  VIRBase ID:  

VHID00451637

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-5p:  MIMAT0002188          NEK6:  NM_001166169     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-6-5p	NEK6
miRBase Accession/Entrez ID	MIMAT0002188	10783
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SID6-1512

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NEK6	chr9:127043937(+) A-I      intronic chr9:127043919(+) A-I      intronic chr9:127043811(+) A-I      intronic chr9:127043806(+) A-I      intronic chr9:127067631(+) A-I      intronic chr9:127050750(+) A-I      intronic chr9:127049945(+) A-I      intronic chr9:127049939(+) A-I      intronic chr9:127027005(+) A-I      intronic chr9:127027006(+) A-I      intronic chr9:127027009(+) A-I      intronic chr9:127027015(+) A-I      intronic chr9:127098302(+) A-I      intronic chr9:127098303(+) A-I      intronic chr9:127098322(+) A-I      intronic chr9:127098342(+) A-I      intronic chr9:127026905(+) A-I      intronic chr9:127039634(+) A-I      intronic chr9:127100498(+) A-I      intronic chr9:127100389(+) A-I      intronic chr9:127100291(+) A-I      intronic chr9:127098357(+) A-I      intronic chr9:127098355(+) A-I      intronic chr9:127098309(+) A-I      intronic chr9:127096287(+) A-I      intronic chr9:127039614(+) A-I      intronic chr9:127039582(+) A-I      intronic chr9:127096241(+) A-I      intronic chr9:127096238(+) A-I      intronic chr9:127096143(+) A-I      intronic chr9:127039579(+) A-I      intronic chr9:127039564(+) A-I      intronic chr9:127031856(+) A-I      intronic chr9:127031798(+) A-I      intronic chr9:127031794(+) A-I      intronic chr9:127031779(+) A-I      intronic chr9:127031757(+) A-I      intronic chr9:127031782(+) A-I      intronic chr9:127096121(+) A-I      intronic chr9:127070669(+) A-I      intronic chr9:127056686(+) A-I      intronic chr9:127053766(+) A-I      intronic chr9:127053758(+) A-I      intronic chr9:127053735(+) A-I      intronic chr9:127053730(+) A-I      intronic chr9:127053681(+) A-I      intronic chr9:127050802(+) A-I      intronic chr9:127049918(+) A-I      intronic chr9:127031756(+) A-I      intronic chr9:127031753(+) A-I      intronic chr9:127027742(+) A-I      intronic chr9:127031733(+) A-I      intronic chr9:127031714(+) A-I      intronic chr9:127031683(+) A-I      intronic chr9:127050792(+) A-I      intronic chr9:127022790(+) A-I      intronic chr9:127022726(+) A-I      intronic chr9:127050728(+) A-I      intronic chr9:127050571(+) A-I      intronic chr9:127022704(+) A-I      intronic chr9:127050567(+) A-I      intronic chr9:127050054(+) A-I      intronic chr9:127049928(+) A-I      intronic chr9:127046532(+) A-I      intronic chr9:127046451(+) A-I      intronic chr9:127046422(+) A-I      intronic chr9:127043958(+) A-I      intronic chr9:127043946(+) A-I      intronic chr9:127027574(+) A-I      intronic chr9:127031837(+) A-I      intronic chr9:127098466(+) A-I      intronic chr9:127044052(+) A-I      intronic chr9:127046478(+) A-I      intronic chr9:127100449(+) A-I      intronic chr9:127051339(+) A-I      intronic chr9:127049848(+) A-I      intronic chr9:127043897(+) A-I      intronic chr9:127026826(+) A-I      intronic chr9:127049904(+) A-I      intronic chr9:127049948(+) A-I      intronic chr9:127100522(+) A-I      intronic chr9:127046485(+) A-I      intronic chr9:127022696(+) A-I      intronic chr9:127050577(+) A-I      intronic chr9:127046481(+) A-I      intronic chr9:127046539(+) A-I      intronic chr9:127099026(+) A-I      intronic chr9:127027525(+) A-I      intronic chr9:127050646(+) A-I      intronic chr9:127098287(+) A-I      intronic chr9:127043941(+) A-I      intronic chr9:127074218(+) A-I      intronic chr9:127026935(+) A-I      intronic chr9:127053790(+) A-I      intronic chr9:127051387(+) A-I      intronic chr9:127043860(+) A-I      intronic chr9:127079628(+) A-I      intronic chr9:127031853(+) A-I      intronic chr9:127050747(+) A-I      intronic chr9:127049944(+) A-I      intronic chr9:127053817(+) A-I      intronic chr9:127051393(+) A-I      intronic chr9:127049967(+) A-I      intronic chr9:127022773(+) A-I      intronic chr9:127053826(+) A-I      intronic chr9:127053720(+) A-I      intronic chr9:127099135(+) A-I      intronic chr9:127051377(+) A-I      intronic chr9:127039604(+) A-I      intronic chr9:127083129(+) A-I      intronic chr9:127053784(+) A-I      intronic chr9:127022950(+) A-I      intronic chr9:127046466(+) A-I      intronic chr9:127046350(+) A-I      intronic chr9:127050016(+) A-I      intronic chr9:127099141(+) A-I      intronic chr9:127051337(+) A-I      intronic chr9:127043983(+) A-I      intronic chr9:127050772(+) A-I      intronic chr9:127100425(+) A-I      intronic chr9:127050701(+) A-I      intronic chr9:127049943(+) A-I      intronic chr9:127051311(+) A-I      intronic chr9:127072980(+) A-I      intronic chr9:127072970(+) A-I      intronic chr9:127046441(+) A-I      intronic chr9:127026843(+) A-I      intronic chr9:127046408(+) A-I      intronic chr9:127046577(+) A-I      intronic chr9:127050569(+) A-I      intronic chr9:127096134(+) A-I      intronic chr9:127053651(+) A-I      intronic chr9:127098263(+) A-I      intronic chr9:127050086(+) A-I      intronic chr9:127050625(+) A-I      intronic chr9:127050837(+) A-I      intronic chr9:127050737(+) A-I      intronic chr9:127050825(+) A-I      intronic chr9:127050015(+) A-I      intronic chr9:127050824(+) A-I      intronic chr9:127096186(+) A-I      intronic chr9:127041764(+) A-I      intronic chr9:127050748(+) A-I      intronic chr9:127050679(+) A-I      intronic chr9:127049849(+) A-I      intronic chr9:127050797(+) A-I      intronic chr9:127046578(+) A-I      intronic chr9:127031792(+) A-I      intronic chr9:127046413(+) A-I      intronic chr9:127050043(+) A-I      intronic chr9:127039559(+) A-I      intronic chr9:127093393(+) A-I      intronic chr9:127049826(+) A-I      intronic chr9:127049942(+) A-I      intronic chr9:127070778(+) A-I      intronic chr9:127044012(+) A-I      intronic chr9:127046548(+) A-I      intronic chr9:127098467(+) A-I      intronic chr9:127083122(+) A-I      intronic chr9:127026928(+) A-I      intronic chr9:127100480(+) A-I      intronic chr9:127050645(+) A-I      intronic chr9:127053816(+) A-I      intronic chr9:127098207(+) A-I      intronic chr9:127096108(+) A-I      intronic chr9:127072981(+) A-I      intronic chr9:127053785(+) A-I      intronic chr9:127050743(+) A-I      intronic chr9:127053686(+) A-I      intronic chr9:127096196(+) A-I      intronic chr9:127099030(+) A-I      intronic chr9:127050798(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NEK6	chr9:127050797(+) A-I intron -    22327324 chr9:127050798(+) A-I intron -    22327324 chr9:127050701(+) A-I intron -    21960545 chr9:127031792(+) A-G intron -    22484847 chr9:127043941(+) A-G intron -    22484847 chr9:127046370(+) A-G intron -    22484847 chr9:127046408(+) A-G intron -    22484847 chr9:127046413(+) A-G intron -    22484847 chr9:127046485(+) A-G intron -    22484847 chr9:127046530(+) A-G intron -    22484847 chr9:127046548(+) A-G intron -    22484847 chr9:127049942(+) A-G intron -    22484847 chr9:127049943(+) A-G intron -    22484847 chr9:127049948(+) A-G intron -    22484847 chr9:127049967(+) A-G intron -    22484847 chr9:127050079(+) A-G intron -    22484847 chr9:127050086(+) A-G intron -    22484847 chr9:127050577(+) A-G intron -    22484847 chr9:127050625(+) A-G intron -    22484847 chr9:127050626(+) A-G intron -    22484847 chr9:127050743(+) A-G intron -    22484847 chr9:127050746(+) A-G intron -    22484847 chr9:127050749(+) A-G intron -    22484847 chr9:127050797(+) A-G intron -    22484847 chr9:127050798(+) A-G intron -    22484847 chr9:127050825(+) A-G intron -    22484847 chr9:127050837(+) A-G intron -    22484847 chr9:127051360(+) A-G intron -    22484847 chr9:127051377(+) A-T intron -    22484847 chr9:127051393(+) A-G intron -    22484847 chr9:127053651(+) A-T intron -    22484847 chr9:127053791(+) A-G intron -    22484847 chr9:127053817(+) A-G intron -    22484847 chr9:127067744(+) A-T intron -    22484847 chr9:127083129(+) A-G intron -    22484847 chr9:127096196(+) A-G intron -    22484847 chr9:127098147(+) A-G intron -    22484847 chr9:127098263(+) A-G intron -    22484847 chr9:127098466(+) A-G intron -    22484847 chr9:127100299(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NEK6	chr9:127031946-127031947(+) Gm intron       - chr9:127074874-127074875(+) Y CDS//intron       25219674//26075521 chr9:127076246-127076247(+) Gm CDS//intron       - chr9:127113123-127113124(+) m6A CDS       24284625 chr9:127113162-127113163(+) m6A CDS       24284625 chr9:127113175-127113176(+) Y CDS       26075521 chr9:127113314-127113315(+) m6A 3'UTR       24284625//24209618//24981863//26404942 chr9:127113323-127113324(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr9:127113460-127113461(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr9:127113587-127113588(+) m6A 3'UTR       24284625//24209618 chr9:127113598-127113599(+) m6A 3'UTR       24284625//24209618 chr9:127113904-127113905(+) m6A 3'UTR       24284625//24209618 chr9:127114145-127114146(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:127114226-127114227(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:127114240-127114241(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:127114286-127114287(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr9:127114319-127114320(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr9:127114337-127114338(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr9:127114355-127114356(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr9:127114365-127114366(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr9:127114471-127114472(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr9:127114555-127114556(+) m6A 3'UTR       24284625//25456834//24981863 chr9:127114592-127114593(+) m6A 3'UTR       24284625//25456834//24981863 chr9:127114677-127114678(+) m6A 3'UTR       24284625//24981863 chr9:127114745-127114746(+) m6A 3'UTR       24284625//24981863 chr9:127114760-127114761(+) m6A 3'UTR       24284625//24981863 chr9:127114766-127114767(+) m6A 3'UTR       24284625//24981863 chr9:127114795-127114796(+) m6A 3'UTR       24284625//24981863 chr9:127114805-127114806(+) m6A 3'UTR       24284625//24981863 chr9:127114870-127114871(+) m6A 3'UTR       24284625 chr9:127114996-127114997(+) m6A 3'UTR       24284625 chr9:127115054-127115055(+) m6A 3'UTR       24284625 chr9:127115178-127115179(+) m6A 3'UTR       24284625//24209618//24981863 chr9:127115195-127115196(+) m6A 3'UTR       24284625//24209618//24981863 chr9:127115273-127115274(+) m6A 3'UTR       24284625//24981863 chr9:127115287-127115288(+) m6A 3'UTR       24284625//24981863 chr9:127115309-127115310(+) m6A 3'UTR       24284625//24981863 chr9:127115384-127115385(+) m6A 3'UTR       24284625 chr9:127115402-127115403(+) m6A 3'UTR       24284625 chr9:127115482-127115483(+) m6A 3'UTR       24284625 chr9:127115487-127115488(+) m6A 3'UTR       24284625 chr9:127115492-127115493(+) m6A 3'UTR       24284625 chr9:127115509-127115510(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NEK6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	kshv-miR-K12-6-5p	l-685,458       5479543

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-6-5p
Interactor2: NEK6

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg