Basic Information:

  VIRBase ID:  

VHID00450018

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-6-5p:  MIMAT0002188          LYST:  NR_102436     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-6-5p	LYST
miRBase Accession/Entrez ID	MIMAT0002188	1130
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CHS//CHS1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LYST	chr1:235917644(-) A-I      intronic chr1:235914093(-) A-I      intronic chr1:235914092(-) A-I      intronic chr1:235914074(-) A-I      intronic chr1:235828313(-) A-I      intronic chr1:235914067(-) A-I      intronic chr1:235914066(-) A-I      intronic chr1:235914064(-) A-I      intronic chr1:235914039(-) A-I      intronic chr1:235902312(-) A-I      intronic chr1:235902308(-) A-I      intronic chr1:235902297(-) A-I      intronic chr1:235902284(-) A-I      intronic chr1:235990155(-) A-I      intronic chr1:235990158(-) A-I      intronic chr1:235990177(-) A-I      intronic chr1:235990184(-) A-I      intronic chr1:235990249(-) A-I      intronic chr1:235990531(-) A-I      intronic chr1:235992347(-) A-I      intronic chr1:235992380(-) A-I      intronic chr1:235902294(-) A-I      intronic chr1:235992440(-) A-I      intronic chr1:235913453(-) A-I      intronic chr1:235992382(-) A-I      intronic chr1:235828312(-) A-I      intronic chr1:235828302(-) A-I      intronic chr1:235828289(-) A-I      intronic chr1:235828288(-) A-I      intronic chr1:235828287(-) A-I      intronic chr1:235914102(-) A-I      intronic chr1:235828286(-) A-I      intronic chr1:235917641(-) A-I      intronic chr1:235828331(-) A-I      intronic chr1:235983717(-) A-I      intronic chr1:235828326(-) A-I      intronic chr1:235913483(-) A-I      intronic chr1:235917638(-) A-I      intronic chr1:235917629(-) A-I      intronic chr1:235890697(-) A-I      intronic chr1:235890696(-) A-I      intronic chr1:235890691(-) A-I      intronic chr1:235890679(-) A-I      intronic chr1:235990472(-) A-I      intronic chr1:235990460(-) A-I      intronic chr1:235990447(-) A-I      intronic chr1:235990446(-) A-I      intronic chr1:235990186(-) A-I      intronic chr1:235990176(-) A-I      intronic chr1:235990160(-) A-I      intronic chr1:235990152(-) A-I      intronic chr1:235990146(-) A-I      intronic chr1:235990142(-) A-I      intronic chr1:235990106(-) A-I      intronic chr1:235990103(-) A-I      intronic chr1:235990064(-) A-I      intronic chr1:235984690(-) A-I      intronic chr1:235984685(-) A-I      intronic chr1:235984674(-) A-I      intronic chr1:235984661(-) A-I      intronic chr1:235984650(-) A-I      intronic chr1:235983943(-) A-I      intronic chr1:235983890(-) A-I      intronic chr1:235983864(-) A-I      intronic chr1:235983775(-) A-I      intronic chr1:235924336(-) A-I      intronic chr1:235918685(-) A-I      intronic chr1:235918613(-) A-I      intronic chr1:235918607(-) A-I      intronic chr1:235917805(-) A-I      intronic chr1:235917611(-) A-I      intronic chr1:235917593(-) A-I      intronic chr1:235917591(-) A-I      intronic chr1:235917540(-) A-I      intronic chr1:235890713(-) A-I      intronic chr1:235882591(-) A-I      intronic chr1:235855125(-) A-I      intronic chr1:235845525(-) A-I      intronic chr1:235845487(-) A-I      intronic chr1:235843711(-) A-I      intronic chr1:235843701(-) A-I      intronic chr1:235843695(-) A-I      intronic chr1:235828868(-) A-I      intronic chr1:235828730(-) A-I      intronic chr1:235828705(-) A-I      intronic chr1:235828321(-) A-I      intronic chr1:235828298(-) A-I      intronic chr1:235828290(-) A-I      intronic chr1:235828226(-) A-I      intronic chr1:235828154(-) A-I      intronic chr1:235983866(-) A-I      intronic chr1:236025984(-) A-I      intronic chr1:236025879(-) A-I      intronic chr1:236002688(-) A-I      intronic chr1:236002622(-) A-I      intronic chr1:236002592(-) A-I      intronic chr1:235990625(-) A-I      intronic chr1:235990601(-) A-I      intronic chr1:235990520(-) A-I      intronic chr1:235990569(-) A-I      intronic chr1:235856149(-) A-I      intronic chr1:235917670(-) A-I      intronic chr1:235990120(-) A-I      intronic chr1:236026020(-) A-I      intronic chr1:235923096(-) A-I      intronic chr1:235828202(-) A-I      intronic chr1:236002629(-) A-I      intronic chr1:235917733(-) A-I      intronic chr1:235917622(-) A-I      intronic chr1:235998333(-) A-I      intronic chr1:235917707(-) A-I      intronic chr1:235869288(-) A-I      intronic chr1:235983808(-) A-I      intronic chr1:235828647(-) A-I      intronic chr1:235990264(-) A-I      intronic chr1:235990459(-) A-I      intronic chr1:235843648(-) A-I      intronic chr1:236002380(-) A-I      intronic chr1:235990196(-) A-I      intronic chr1:235855271(-) A-I      intronic chr1:235845581(-) A-I      intronic chr1:235828800(-) A-I      intronic chr1:235963355(-) A-I      intronic chr1:235845543(-) A-I      intronic chr1:235856118(-) A-I      intronic chr1:235883364(-) A-I      intronic chr1:235990557(-) A-I      intronic chr1:235828199(-) A-I      intronic chr1:236025878(-) A-I      intronic chr1:235828205(-) A-I      intronic chr1:235845619(-) A-I      intronic chr1:235917625(-) A-I      intronic chr1:236002391(-) A-I      intronic chr1:235845413(-) A-I      intronic chr1:235828366(-) A-I      intronic chr1:235990220(-) A-I      intronic chr1:236026647(-) A-I      intronic chr1:235845366(-) A-I      intronic chr1:236002683(-) A-I      intronic chr1:235882394(-) A-I      intronic chr1:235848980(-) A-I      intronic chr1:235983830(-) A-I      intronic chr1:235984593(-) A-I      intronic chr1:235882415(-) A-I      intronic chr1:235926926(-) A-I      intronic chr1:236026013(-) A-I      intronic chr1:235855818(-) A-I      intronic chr1:235918258(-) A-I      intronic chr1:235990149(-) A-I      intronic chr1:235923183(-) A-I      intronic chr1:235828165(-) A-I      intronic chr1:235990179(-) A-I      intronic chr1:235828653(-) A-I      intronic chr1:235990606(-) A-I      intronic chr1:235990498(-) A-I      intronic chr1:236026528(-) A-I      intronic chr1:235918525(-) A-I      intronic chr1:235828218(-) A-I      intronic chr1:235855279(-) A-I      intronic chr1:235990178(-) A-I      intronic chr1:235855586(-) A-I      intronic chr1:235990171(-) A-I      intronic chr1:235983083(-) A-I      intronic chr1:235845456(-) A-I      intronic chr1:235990038(-) A-I      intronic chr1:235917700(-) A-I      intronic chr1:235882585(-) A-I      intronic chr1:235918298(-) A-I      intronic chr1:235918522(-) A-I      intronic chr1:235983834(-) A-I      intronic chr1:235917654(-) A-I      intronic chr1:235856559(-) A-I      intronic chr1:235868782(-) A-I      intronic chr1:235844165(-) A-I      intronic chr1:235882447(-) A-I      intronic chr1:235828790(-) A-I      intronic chr1:235992396(-) A-I      intronic chr1:235992457(-) A-I      intronic chr1:236026610(-) A-I      intronic chr1:235917671(-) A-I      intronic chr1:235984571(-) A-I      intronic chr1:235983767(-) A-I      intronic chr1:235983078(-) A-I      intronic chr1:235856426(-) A-I      intronic chr1:235917618(-) A-I      intronic chr1:235984589(-) A-I      intronic chr1:235855166(-) A-I      intronic chr1:235917731(-) A-I      intronic chr1:235828803(-) A-I      intronic chr1:235855134(-) A-I      intronic chr1:235983722(-) A-I      intronic chr1:235845549(-) A-I      intronic chr1:235855626(-) A-I      intronic chr1:235975805(-) A-I      intronic chr1:235984557(-) A-I      intronic chr1:235990461(-) A-I      intronic chr1:235882430(-) A-I      intronic chr1:235990199(-) A-I      intronic chr1:235990631(-) A-I      intronic chr1:235983867(-) A-I      intronic chr1:235943609(-) A-I      intronic chr1:236002619(-) A-I      intronic chr1:235855099(-) A-I      intronic chr1:235990545(-) A-I      intronic chr1:236026503(-) A-I      intronic chr1:235828829(-) A-I      intronic chr1:235990262(-) A-I      intronic chr1:235828367(-) A-I      intronic chr1:235983833(-) A-I      intronic chr1:235855887(-) A-I      intronic chr1:235828258(-) A-I      intronic chr1:236002729(-) A-I      intronic chr1:235868961(-) A-I      intronic chr1:235828865(-) A-I      intronic chr1:235870692(-) A-I      intronic chr1:235855597(-) A-I      intronic chr1:235990492(-) A-I      intronic chr1:235983929(-) A-I      intronic chr1:235855376(-) A-I      intronic chr1:235990215(-) A-I      intronic chr1:235984654(-) A-I      intronic chr1:235917601(-) A-I      intronic chr1:235984580(-) A-I      intronic chr1:235848094(-) A-I      intronic chr1:235990150(-) A-I      intronic chr1:235983879(-) A-I      intronic chr1:236025067(-) A-I      intronic chr1:235917710(-) A-I      intronic chr1:235882506(-) A-I      intronic chr1:235855142(-) A-I      intronic chr1:235843758(-) A-I      intronic chr1:235990584(-) A-I      intronic chr1:235855367(-) A-I      intronic chr1:235983921(-) A-I      intronic chr1:235990495(-) A-I      intronic chr1:235828222(-) A-I      intronic chr1:235845563(-) A-I      intronic chr1:236020384(-) A-I      intronic chr1:236025048(-) A-I      intronic chr1:235828175(-) A-I      intronic chr1:235990159(-) A-I      intronic chr1:235983125(-) A-I      intronic chr1:235856505(-) A-I      intronic chr1:235990547(-) A-I      intronic chr1:235855082(-) A-I      intronic chr1:236025087(-) A-I      intronic chr1:235882391(-) A-I      intronic chr1:235847988(-) A-I      intronic chr1:235856138(-) A-I      intronic chr1:235983746(-) A-I      intronic chr1:235992379(-) A-I      intronic chr1:235990501(-) A-I      intronic chr1:235984545(-) A-I      intronic chr1:235990586(-) A-I      intronic chr1:235983738(-) A-I      intronic chr1:235828238(-) A-I      intronic chr1:235869121(-) A-I      intronic chr1:235856064(-) A-I      intronic chr1:235984651(-) A-I      intronic chr1:235990259(-) A-I      intronic chr1:235828764(-) A-I      intronic chr1:235828297(-) A-I      intronic chr1:235990256(-) A-I      intronic chr1:235943604(-) A-I      intronic chr1:235828261(-) A-I      intronic chr1:235990114(-) A-I      intronic chr1:235990151(-) A-I      intronic chr1:235847989(-) A-I      intronic chr1:235856199(-) A-I      intronic chr1:235963340(-) A-I      intronic chr1:235882590(-) A-I      intronic chr1:235828688(-) A-I      intronic chr1:235845542(-) A-I      intronic chr1:235882424(-) A-I      intronic chr1:235843706(-) A-I      intronic chr1:235828191(-) A-I      intronic chr1:235990623(-) A-I      intronic chr1:236026629(-) A-I      intronic chr1:235918567(-) A-I      intronic chr1:235845589(-) A-I      intronic chr1:235841590(-) A-I      intronic chr1:235990201(-) A-I      intronic chr1:235983084(-) A-I      intronic chr1:235845557(-) A-I      intronic chr1:235984519(-) A-I      intronic chr1:235828665(-) A-I      intronic chr1:235990420(-) A-I      intronic chr1:235843654(-) A-I      intronic chr1:235848128(-) A-I      intronic chr1:235992392(-) A-I      intronic chr1:235984627(-) A-I      intronic chr1:235983758(-) A-I      intronic chr1:235983687(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LYST	chr1:235990120(-) A-I intron -    22327324 chr1:235990122(-) A-I intron -    22327324 chr1:235990545(-) A-I intron -    21960545   //22327324 chr1:235990038(-) A-I intron -    21960545 chr1:235990199(-) A-I intron -    21960545 chr1:235913426(-) A-I intron -    21960545 chr1:235913428(-) A-I intron -    21960545 chr1:235923189(-) A-I intron -    21960545 chr1:235990495(-) A-I intron -    21960545 chr1:235990498(-) A-I intron -    21960545 chr1:235990547(-) A-I intron -    21960545 chr1:235990569(-) A-I intron -    21960545 chr1:235990584(-) A-I intron -    21960545 chr1:235828261(-) A-G intron -    22484847 chr1:235828297(-) A-G intron -    22484847 chr1:235828764(-) A-G intron -    22484847 chr1:235828800(-) A-G intron -    22484847 chr1:235828829(-) A-G intron -    22484847 chr1:235845456(-) A-G intron -    22484847 chr1:235845542(-) A-G intron -    22484847 chr1:235845543(-) A-G intron -    22484847 chr1:235845549(-) A-G intron -    22484847 chr1:235845557(-) A-G intron -    22484847 chr1:235845563(-) A-G intron -    22484847 chr1:235845589(-) A-G intron -    22484847 chr1:235855082(-) A-G intron -    22484847 chr1:235855099(-) A-G intron -    22484847 chr1:235855271(-) A-G intron -    22484847 chr1:235855279(-) A-G intron -    22484847 chr1:235856149(-) A-G intron -    22484847 chr1:235856426(-) A-G intron -    22484847 chr1:235856559(-) A-G intron -    22484847 chr1:235869288(-) A-G intron -    22484847 chr1:235870692(-) A-G intron -    22484847 chr1:235882506(-) A-G intron -    22484847 chr1:235917670(-) A-G intron -    22484847 chr1:235918298(-) A-G intron -    22484847 chr1:235983078(-) A-G intron -    22484847 chr1:235983083(-) A-G intron -    22484847 chr1:235983084(-) A-G intron -    22484847 chr1:235983125(-) A-G intron -    22484847 chr1:235983830(-) A-G intron -    22484847 chr1:235983833(-) A-G intron -    22484847 chr1:235983867(-) A-G intron -    22484847 chr1:235983879(-) A-G intron -    22484847 chr1:235984557(-) A-G intron -    22484847 chr1:235984571(-) A-G intron -    22484847 chr1:235984580(-) A-G intron -    22484847 chr1:235984589(-) A-G intron -    22484847 chr1:235984593(-) A-G intron -    22484847 chr1:235984651(-) A-G intron -    22484847 chr1:235984654(-) A-G intron -    22484847 chr1:235990038(-) A-G intron -    22484847 chr1:235990120(-) A-G intron -    22484847 chr1:235990151(-) A-G intron -    22484847 chr1:235990171(-) A-G intron -    22484847 chr1:235990196(-) A-G intron -    22484847 chr1:235990201(-) A-G intron -    22484847 chr1:235990256(-) A-G intron -    22484847 chr1:235990264(-) A-G intron -    22484847 chr1:235990459(-) A-G intron -    22484847 chr1:235990461(-) A-G intron -    22484847 chr1:235990495(-) A-G intron -    22484847 chr1:235990545(-) A-G intron -    22484847 chr1:235990547(-) A-G intron -    22484847 chr1:235990569(-) A-G intron -    22484847 chr1:236002619(-) A-G intron -    22484847 chr1:236002683(-) A-G intron -    22484847 chr1:236025048(-) A-G intron -    22484847 chr1:236025087(-) A-G intron -    22484847 chr1:236025878(-) A-G intron -    22484847 chr1:236026020(-) A-G intron -    22484847 chr1:236026503(-) A-G intron -    22484847 chr1:236026528(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LYST	chr1:235826137-235826138(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085 chr1:235826159-235826160(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085 chr1:235826196-235826197(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085 chr1:235826228-235826229(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085 chr1:235826284-235826285(-) m6A 3'UTR//CDS//exon       22608085 chr1:235826300-235826301(-) m6A 3'UTR//CDS//exon       22608085 chr1:235826325-235826326(-) m6A 3'UTR//CDS//exon       - chr1:235826336-235826337(-) m6A 3'UTR//CDS//exon       - chr1:235827337-235827338(-) m6A 3'UTR//CDS//exon       - chr1:235827868-235827869(-) m6A 3'UTR//CDS//exon       - chr1:235827898-235827899(-) m6A 3'UTR//CDS//exon       - chr1:235896934-235896935(-) Y CDS//exon       26075521 chr1:235897804-235897805(-) m6A 3'UTR//CDS//exon       24981863 chr1:235901217-235901218(-) m6A exon//intron       22608085 chr1:235901277-235901278(-) m6A exon//intron       22608085 chr1:235901285-235901286(-) m6A exon//intron       22608085 chr1:235901331-235901332(-) m6A exon//intron       27773535//22608085 chr1:235901531-235901532(-) m6A exon//intron       22608085 chr1:235901626-235901627(-) m6A exon//intron       22608085 chr1:235901704-235901705(-) m6A exon//intron       22608085 chr1:235922522-235922523(-) m6A 3'UTR//CDS//exon       24284625//26404942//27773535//22608085 chr1:235922537-235922538(-) m6A 3'UTR//CDS//exon       24284625//26404942//27773535//22608085 chr1:235922635-235922636(-) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:235922714-235922715(-) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:235922792-235922793(-) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:235969282-235969283(-) m6A CDS//exon       27773535//22608085 chr1:235969338-235969339(-) m6A CDS//exon       24981863//27773535//22608085 chr1:235969361-235969362(-) m6A CDS//exon       24981863//27773535//22608085 chr1:235969373-235969374(-) m6A CDS//exon       24981863//27773535//22608085 chr1:235969435-235969436(-) m6A CDS//exon       24981863//27773535//22608085 chr1:235969498-235969499(-) m6A CDS//exon       24284625//22608085 chr1:235969550-235969551(-) m6A CDS//exon       22608085 chr1:235969570-235969571(-) m6A CDS//exon       22608085 chr1:235969739-235969740(-) m6A CDS//exon       26404942//22608085 chr1:235969773-235969774(-) m6A CDS//exon       24981863//26404942//22608085 chr1:235969900-235969901(-) m6A CDS//exon       24981863//26404942//22608085 chr1:235969907-235969908(-) m6A CDS//exon       24981863//26404942//22608085 chr1:235969971-235969972(-) m6A CDS//exon       26404942//22608085 chr1:235972006-235972007(-) m6A CDS//exon       24981863//26404942//27773535//22608085 chr1:235972024-235972025(-) m6A CDS//exon       24981863//26404942//27773535//22608085 chr1:235972131-235972132(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:235972147-235972148(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:235972160-235972161(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:235972266-235972267(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:235972511-235972512(-) m6A CDS//exon       24981863//26404942//22608085 chr1:235972525-235972526(-) m6A CDS//exon       24981863//26404942//22608085 chr1:235972540-235972541(-) m6A CDS//exon       24981863//26404942//22608085 chr1:235972778-235972779(-) m6A CDS//exon       26404942 chr1:235972976-235972977(-) m6A CDS//exon       26404942//22608085 chr1:235972986-235972987(-) m6A CDS//exon       26404942//22608085 chr1:235973129-235973130(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr1:235973163-235973164(-) m6A CDS//exon       24284625//27773535//22608085 chr1:235973171-235973172(-) m6A CDS//exon       24284625//27773535//22608085 chr1:235973224-235973225(-) m6A CDS//exon       24284625//27773535//22608085 chr1:235973365-235973366(-) m6A CDS//exon       24981863//26404942//27773535//22608085 chr1:235973416-235973417(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:235973427-235973428(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:235973481-235973482(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:235973505-235973506(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:235973521-235973522(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:235973526-235973527(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:235973636-235973637(-) m6A CDS//exon       27773535//22608085 chr1:235993619-235993620(-) m1A CDS//exon       26863196 chr1:236026704-236026705(-) Y intron       16381836 chr1:236026707-236026708(-) Y intron       16381836 chr1:236026710-236026711(-) Um intron       16381836 chr1:236026713-236026714(-) Gm intron       16381836

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LYST	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	kshv-miR-K12-6-5p	l-685,458       5479543

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-6-5p
Interactor2: LYST

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg