Basic Information:

  VIRBase ID:  

VHID00447662

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-7-3p:  MIMAT0002187          SELL:  NR_029467     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-7-3p	SELL
miRBase Accession/Entrez ID	MIMAT0002187	6402
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD62L//LAM1//LECAM1//LEU8//LNHR//LSEL//LYAM1//PLNHR//TQ1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SELL	chr1:169670209(-) A-I      intronic chr1:169670319(-) A-I      intronic chr1:169669550(-) A-I      intronic chr1:169669499(-) A-I      intronic chr1:169670264(-) A-I      intronic chr1:169669444(-) A-I      intronic chr1:169670228(-) A-I      intronic chr1:169667982(-) A-I      intronic chr1:169669493(-) A-I      intronic chr1:169670268(-) A-I      intronic chr1:169670276(-) A-I      intronic chr1:169667998(-) A-I      intronic chr1:169670120(-) A-I      intronic chr1:169669551(-) A-I      intronic chr1:169669418(-) A-I      intronic chr1:169669417(-) A-I      intronic chr1:169668125(-) A-I      intronic chr1:169668008(-) A-I      intronic chr1:169670254(-) A-I      intronic chr1:169668003(-) A-I      intronic chr1:169669459(-) A-I      intronic chr1:169670212(-) A-I      intronic chr1:169670345(-) A-I      intronic chr1:169670330(-) A-I      intronic chr1:169670329(-) A-I      intronic chr1:169670187(-) A-I      intronic chr1:169669483(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SELL	chr1:169669483(-) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SELL	chr1:169660345-169660346(-) m6A 3'UTR       26404942 chr1:169660523-169660524(-) m6A 3'UTR       28052920//26404942 chr1:169660567-169660568(-) m6A 3'UTR       24981863//28052920 chr1:169660668-169660669(-) m6A 3'UTR       28052920 chr1:169660677-169660678(-) m6A 3'UTR       - chr1:169677582-169677583(-) m6A CDS//exon       26404942 chr1:169677622-169677623(-) m6A CDS//exon       28052920//26404942//27773535//27371828 chr1:169677649-169677650(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828 chr1:169677658-169677659(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828 chr1:169677691-169677692(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828 chr1:169677722-169677723(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828 chr1:169677794-169677795(-) m6A CDS//exon       24981863//28052920//26404942//27371828 chr1:169677823-169677824(-) m6A CDS//exon       28052920//26404942//27371828 chr1:169677853-169677854(-) m6A CDS//exon       28052920//26404942//27371828 chr1:169677883-169677884(-) m6A CDS//exon       28052920//26404942//27371828 chr1:169677891-169677892(-) m6A CDS//exon       28052920//26404942//27371828 chr1:169677911-169677912(-) m6A CDS//exon       28052920//26404942//27371828 chr1:169677923-169677924(-) m6A CDS//exon       28052920//26404942//27371828 chr1:169679591-169679592(-) m6A CDS//exon       26404942//27371828 chr1:169679614-169679615(-) m6A CDS//exon       27371828 chr1:169679623-169679624(-) m6A CDS//exon       27371828 chr1:169680651-169680652(-) m6A CDS//exon       27371828 chr1:169680662-169680663(-) m6A CDS//exon       27371828 chr1:169680703-169680704(-) m6A 5'UTR//exon       26404942//27371828 chr1:169680710-169680711(-) m6A 5'UTR//exon       26404942//27371828 chr1:169680799-169680800(-) m6A 5'UTR//exon       27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-7-3p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	SELL	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-7-3p
Interactor2: SELL

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg