Basic Information:

  VIRBase ID:  

VHID00447113

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-7-3p:  MIMAT0002187          KIF1A:  NM_001379633     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-7-3p	KIF1A
miRBase Accession/Entrez ID	MIMAT0002187	547
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATSV//C2orf20//HSN2C//MRD9//NESCAVS//SPG30//UNC104

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KIF1A	chr2:241743583(-) A-I      intronic chr2:241750768(-) A-I      intronic chr2:241742226(-) A-I      intronic chr2:241742260(-) A-I      intronic chr2:241750744(-) A-I      intronic chr2:241743600(-) A-I      intronic chr2:241743601(-) A-I      intronic chr2:241743620(-) A-I      intronic chr2:241750562(-) A-I      intronic chr2:241750616(-) A-I      intronic chr2:241750725(-) A-I      intronic chr2:241750735(-) A-I      intronic chr2:241748064(-) A-I      intronic chr2:241743459(-) A-I      intronic chr2:241743534(-) A-I      intronic chr2:241749370(-) A-I      intronic chr2:241749419(-) A-I      intronic chr2:241748259(-) A-I      intronic chr2:241747893(-) A-I      intronic chr2:241748250(-) A-I      intronic chr2:241742246(-) A-I      intronic chr2:241748279(-) A-I      intronic chr2:241748224(-) A-I      intronic chr2:241746733(-) A-I      intronic chr2:241742240(-) A-I      intronic chr2:241742229(-) A-I      intronic chr2:241748253(-) A-I      intronic chr2:241748285(-) A-I      intronic chr2:241747967(-) A-I      intronic chr2:241750575(-) A-I      intronic chr2:241748037(-) A-I      intronic chr2:241750516(-) A-I      intronic chr2:241748020(-) A-I      intronic chr2:241742101(-) A-I      intronic chr2:241742320(-) A-I      intronic chr2:241748286(-) A-I      intronic chr2:241750574(-) A-I      intronic chr2:241743526(-) A-I      intronic chr2:241748384(-) A-I      intronic chr2:241748032(-) A-I      intronic chr2:241743520(-) A-I      intronic chr2:241742222(-) A-I      intronic chr2:241742173(-) A-I      intronic chr2:241749154(-) A-I      intronic chr2:241742235(-) A-I      intronic chr2:241742116(-) A-I      intronic chr2:241742147(-) A-I      intronic chr2:241742311(-) A-I      intronic chr2:241747981(-) A-I      intronic chr2:241748419(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	KIF1A	chr2:241700776(-) A-I exon CDS    19478186 chr2:241747855(-) A-I intron -    15342557 chr2:241747893(-) A-I intron -    15342557 chr2:241747967(-) A-I intron -    15342557 chr2:241747981(-) A-I intron -    15342557 chr2:241747994(-) A-I intron -    15342557 chr2:241748006(-) A-I intron -    15342557 chr2:241748027(-) A-I intron -    15342557 chr2:241748032(-) A-I intron -    15342557 chr2:241748037(-) A-I intron -    15342557 chr2:241748224(-) A-I intron -    15342557 chr2:241748244(-) A-I intron -    15342557 chr2:241748250(-) A-I intron -    15342557 chr2:241748259(-) A-I intron -    15342557 chr2:241748269(-) A-I intron -    15342557 chr2:241748279(-) A-I intron -    15342557 chr2:241748285(-) A-I intron -    15342557 chr2:241748286(-) A-I intron -    15342557 chr2:241748367(-) A-I intron -    15342557 chr2:241748384(-) A-I intron -    15342557 chr2:241748419(-) A-I intron -    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KIF1A	chr2:241653513-241653514(-) m6A 3'UTR//exon       25456834 chr2:241653664-241653665(-) m6A 3'UTR//exon       25456834//24981863//22608085 chr2:241653762-241653763(-) m6A 3'UTR//exon       25456834//24981863//22608085 chr2:241653995-241653996(-) m6A 3'UTR//exon       25456834 chr2:241654096-241654097(-) m6A 3'UTR//exon       25456834 chr2:241654107-241654108(-) m6A 3'UTR//exon       25456834 chr2:241654142-241654143(-) m6A 3'UTR//exon       25456834 chr2:241654181-241654182(-) m6A 3'UTR//exon       25456834 chr2:241654189-241654190(-) m6A 3'UTR//exon       25456834 chr2:241654263-241654264(-) m6A 3'UTR//exon       25456834 chr2:241654554-241654555(-) m6A 3'UTR//exon       25456834//27773536 chr2:241654625-241654626(-) m6A 3'UTR//exon       27773536 chr2:241654654-241654655(-) m6A 3'UTR//exon       27773536 chr2:241655823-241655824(-) m6A 3'UTR//exon       25456834//27773536 chr2:241655850-241655851(-) m6A 3'UTR//exon       25456834//27773536 chr2:241655868-241655869(-) m6A 3'UTR//exon       25456834//27773536 chr2:241655876-241655877(-) m6A 3'UTR//exon       25456834//27773536 chr2:241655917-241655918(-) m6A 3'UTR//exon       24209618//25456834//27773536 chr2:241659245-241659246(-) m6A CDS//exon       27773536 chr2:241659341-241659342(-) m6A CDS//exon       27773536 chr2:241661978-241661979(-) m6A CDS//exon       27773536 chr2:241676561-241676562(-) m6A CDS//exon       24981863 chr2:241676572-241676573(-) m6A CDS//exon       24981863 chr2:241684886-241684887(-) m6A CDS       - chr2:241700231-241700232(-) m6A CDS       - chr2:241702490-241702491(-) m6A CDS       27773536 chr2:241702498-241702499(-) m6A CDS       27773536 chr2:241702651-241702652(-) m6A CDS       27773536 chr2:241702759-241702760(-) m6A CDS       27773536 chr2:241705176-241705177(-) m6A CDS       27773536 chr2:241706405-241706406(-) m6A CDS       27773536 chr2:241706733-241706734(-) m6A CDS       27773536 chr2:241709065-241709066(-) m6A CDS       27773536 chr2:241709089-241709090(-) m6A CDS//exon       27773536 chr2:241709119-241709120(-) m6A CDS//exon       - chr2:241710393-241710394(-) m6A CDS//exon       - chr2:241713663-241713664(-) m6A CDS       27773536 chr2:241715272-241715273(-) m6A CDS       27773536 chr2:241715324-241715325(-) m6A CDS       27773536 chr2:241722015-241722016(-) m6A CDS       27773536 chr2:241723210-241723211(-) m6A CDS       24981863//27773536 chr2:241724425-241724426(-) m6A CDS       24981863 chr2:241724488-241724489(-) m6A CDS       24981863 chr2:241726722-241726723(-) m6A CDS       22575960 chr2:241727489-241727490(-) m6A CDS       22575960 chr2:241727603-241727604(-) m6A CDS       22575960 chr2:241727639-241727640(-) m6A CDS       22575960 chr2:241758354-241758355(-) m6A 5'UTR//intron       25456834 chr2:241758362-241758363(-) m6A 5'UTR//intron       25456834 chr2:241758376-241758377(-) m6A 5'UTR//intron       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-7-3p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	KIF1A	Chromatin K562 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-7-3p
Interactor2: KIF1A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg