Detail Information

Basic Information:


  VIRBase ID:  

VHID00447106

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-7-3p:           ARL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-7-3p ARL1
miRBase
Accession/Entrez ID		 MIMAT0002187 400
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - ARFL1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ARL1
chr12:101794866(-) A-I      NonSyn:Lys->Glu
chr12:101791453(-) A-I      intronic
chr12:101795991(-) A-I      intronic
chr12:101794833(-) A-I      intronic
chr12:101794831(-) A-I      intronic
chr12:101791471(-) A-I      intronic
chr12:101794836(-) A-I      intronic
chr12:101794072(-) A-I      intronic
chr12:101792098(-) A-I      intronic
chr12:101797675(-) A-I      intronic
chr12:101795314(-) A-I      intronic
chr12:101798718(-) A-I      intronic
chr12:101796140(-) A-I      intronic
chr12:101795158(-) A-I      intronic
chr12:101791509(-) A-I      intronic
chr12:101797598(-) A-I      intronic
chr12:101791941(-) A-I      intronic
chr12:101799524(-) A-I      intronic
chr12:101795171(-) A-I      intronic
chr12:101797655(-) A-I      intronic
chr12:101793983(-) A-I      intronic
chr12:101792092(-) A-I      intronic
chr12:101797619(-) A-I      intronic
chr12:101799449(-) A-I      intronic
chr12:101795409(-) A-I      intronic
chr12:101791249(-) A-I      intronic
chr12:101793808(-) A-I      intronic
chr12:101793798(-) A-I      intronic
chr12:101791552(-) A-I      intronic
chr12:101792049(-) A-I      intronic
chr12:101792088(-) A-I      intronic
chr12:101795370(-) A-I      intronic
chr12:101799477(-) A-I      intronic
chr12:101798033(-) A-I      intronic
chr12:101791946(-) A-I      intronic
chr12:101799534(-) A-I      intronic
chr12:101797589(-) A-I      intronic
chr12:101793791(-) A-I      intronic
chr12:101791442(-) A-I      intronic
chr12:101799531(-) A-I      intronic
chr12:101793256(-) A-I      intronic
chr12:101798810(-) A-I      intronic
chr12:101799502(-) A-I      intronic
chr12:101793110(-) A-I      intronic
chr12:101799501(-) A-I      intronic
chr12:101799450(-) A-I      intronic
chr12:101795990(-) A-I      intronic
chr12:101791416(-) A-I      intronic
chr12:101795401(-) A-I      intronic
chr12:101792497(-) A-I      intronic
chr12:101798899(-) A-I      intronic
chr12:101791312(-) A-I      intronic
chr12:101798068(-) A-I      intronic
chr12:101798822(-) A-I      intronic
chr12:101794110(-) A-I      intronic
chr12:101793822(-) A-I      intronic
chr12:101795367(-) A-I      intronic
chr12:101793150(-) A-I      intronic
chr12:101796194(-) A-I      intronic
chr12:101799431(-) A-I      intronic
chr12:101798123(-) A-I      intronic
chr12:101791514(-) A-I      intronic
chr12:101792382(-) A-I      intronic
chr12:101798072(-) A-I      intronic
chr12:101797590(-) A-I      intronic
chr12:101791346(-) A-I      intronic
chr12:101797546(-) A-I      intronic
chr12:101793124(-) A-I      intronic
chr12:101793127(-) A-I      intronic
chr12:101791402(-) A-I      intronic
chr12:101798886(-) A-I      intronic
chr12:101791457(-) A-I      intronic
chr12:101793821(-) A-I      intronic
chr12:101793881(-) A-I      intronic
chr12:101798684(-) A-I      intronic
chr12:101795136(-) A-I      intronic
chr12:101798086(-) A-I      intronic
chr12:101797616(-) A-I      intronic
chr12:101795180(-) A-I      intronic
chr12:101798746(-) A-I      intronic
chr12:101798027(-) A-I      intronic
chr12:101792443(-) A-I      intronic
chr12:101797558(-) A-I      intronic
chr12:101795169(-) A-I      intronic
chr12:101795375(-) A-I      intronic
chr12:101792379(-) A-I      intronic
chr12:101796018(-) A-I      intronic
chr12:101796095(-) A-I      intronic
chr12:101791455(-) A-I      intronic
chr12:101796105(-) A-I      intronic
chr12:101795292(-) A-I      intronic
chr12:101797575(-) A-I      intronic
chr12:101791460(-) A-I      intronic
chr12:101796107(-) A-I      intronic
chr12:101799476(-) A-I      intronic
chr12:101793890(-) A-I      intronic
chr12:101795290(-) A-I      intronic
chr12:101798098(-) A-I      intronic
chr12:101793230(-) A-I      intronic
chr12:101798954(-) A-I      intronic
chr12:101798115(-) A-I      intronic
chr12:101793190(-) A-I      intronic
chr12:101798717(-) A-I      intronic
chr12:101796199(-) A-I      intronic
chr12:101793027(-) A-I      intronic
chr12:101792291(-) A-I      intronic
chr12:101798073(-) A-I      intronic
chr12:101791553(-) A-I      intronic
chr12:101791223(-) A-I      intronic
chr12:101795170(-) A-I      intronic
chr12:101798755(-) A-I      intronic
chr12:101798881(-) A-I      intronic
chr12:101792274(-) A-I      intronic
chr12:101798935(-) A-I      intronic
chr12:101792250(-) A-I      intronic
chr12:101793030(-) A-I      intronic
chr12:101795302(-) A-I      intronic
chr12:101796238(-) A-I      intronic
chr12:101793133(-) A-I      intronic
chr12:101798761(-) A-I      intronic
chr12:101792300(-) A-I      intronic
chr12:101798843(-) A-I      intronic
chr12:101796251(-) A-I      intronic
chr12:101797521(-) A-I      intronic
chr12:101793018(-) A-I      intronic
chr12:101792462(-) A-I      intronic
chr12:101797570(-) A-I      intronic
chr12:101795145(-) A-I      intronic
chr12:101794109(-) A-I      intronic
chr12:101791456(-) A-I      intronic
chr12:101793207(-) A-I      intronic
chr12:101798055(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ARL1
chr12:101797675(-) A-I intron -    22327324
chr12:101798055(-) A-I intron -    22327324
chr12:101798098(-) A-I intron -    22327324
chr12:101793124(-) A-G intron -    22484847
chr12:101795136(-) A-G intron -    22484847
chr12:101795158(-) A-G intron -    22484847
chr12:101795170(-) A-G intron -    22484847
chr12:101795375(-) A-G intron -    22484847
chr12:101796251(-) A-G intron -    22484847
chr12:101797558(-) A-G intron -    22484847
chr12:101797590(-) A-G intron -    22484847
chr12:101797616(-) A-G intron -    22484847
chr12:101797675(-) A-G intron -    22484847
chr12:101798055(-) A-G intron -    22484847
chr12:101798072(-) A-G intron -    22484847
chr12:101798086(-) A-G intron -    22484847
chr12:101798098(-) A-G intron -    22484847
chr12:101798746(-) A-G intron -    22484847
chr12:101798881(-) A-G intron -    22484847
chr12:101798886(-) A-G intron -    22484847
chr12:101799431(-) A-G intron -    22484847
chr12:101791455(-) A-G intron -    22484847
chr12:101791456(-) A-G intron -    22484847
chr12:101791457(-) A-G intron -    22484847
chr12:101791460(-) A-G intron -    22484847
chr12:101791510(-) C-A intron -    22484847
chr12:101791512(-) G-C intron -    22484847
chr12:101792379(-) A-G intron -    22484847
chr12:101792382(-) A-G intron -    22484847
chr12:101793190(-) A-G intron -    22484847
chr12:101793230(-) A-G intron -    22484847
chr12:101793821(-) A-G intron -    22484847
chr12:101793822(-) A-G intron -    22484847
chr12:101795290(-) A-G intron -    22484847
chr12:101797521(-) A-G intron -    22484847
chr12:101797546(-) A-G intron -    22484847
chr12:101797598(-) A-G intron -    22484847
chr12:101798073(-) A-G intron -    22484847
chr12:101798761(-) A-G intron -    22484847
chr12:101798810(-) A-G intron -    22484847
chr12:101798843(-) A-G intron -    22484847
chr12:101799476(-) A-G intron -    22484847
chr12:101799477(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ARL1
chr12:101787911-101787912(-) m6A 3'UTR       27773535
chr12:101788039-101788040(-) m6A 3'UTR       27773535
chr12:101789149-101789150(-) Y 3'UTR       25219674
chr12:101789188-101789189(-) Y 3'UTR       25219674
chr12:101790242-101790243(-) m6A 3'UTR//CDS//exon       27371828
chr12:101801436-101801437(-) m6A 5'UTR//exon       25456834//27773535//27773536
chr12:101801453-101801454(-) Am 5'UTR//exon       -
chr12:101801492-101801493(-) m6A 5'UTR//exon       25456834//27773535//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-7-3p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
ARL1
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-7-3p
Interactor2: ARL1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...